Dipodomys ordii (Ord's kangaroo rat): 105982913
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Entry
105982913 CDS
T07834
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105982913 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dord03019
]
105982913 (Cnot1)
Messenger RNA biogenesis [BR:
dord03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105982913 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105982913 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105982913
NCBI-ProteinID:
XP_012868099
UniProt:
A0A1S3EVX2
LinkDB
All DBs
Position
Unknown
AA seq
2216 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFGFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQVRHGHLLMIALS
MLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGL
APEKDQPKSAQLPPETLATMLACLQACAGSVSQELSETILTMVANCSNVMNKARQPPPGV
MPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPA
KAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPTVNNDPFVQRKLGT
SGLNQPTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLE
MLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMAL
GLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEY
IEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQVNTMVTTSTTTTVAKT
VTVTRPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNM
TQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYR
NIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQE
LLYVVPFVAKVLESSIRSVIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTC
EQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTA
SPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRY
CDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMK
QAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALG
LLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDE
YKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVT
EADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQAS
EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFR
LCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR
NVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNL
QVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDT
EGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6651 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccaacaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgttgatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacacagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcacctcatctgtttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagttcagat
ctccgaggttttgctgcccagtttattaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctttttgggcagaagggagcatttggagttggacag
gaacagatagacgcttttcttaagactctgcgcagagattttccccaagaacgctgtcct
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagttctttggctgatttcatgcaa
gaagtaggctacggtttttgtgcaagtattgaagaatgtcggaatataatcatgcagttc
ggtgttcgggaggtcacagctgcccaggttgccagggttttaggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagtatctctgctcctggcagtggaatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaacgtggaagtc
ttgattgatgttcttaaggaactgaacccgagtttgaatttcaaggaggtaacttacgaa
ctagatcatcctggatttcagattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgttccctgtagacttcatatatagaccttggaaa
catgcagaaggccagctctcctttattcaacattcccttataaatccagagatcttctgt
tttgctgactatccctgtcacactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgcttaggctt
gcagaagttgggcagtatgaacaagtcaaacaactctttggctttcctatcaaacactgt
ccagacatgctggtattggccttactccaaatcaacacttcttggcacactctacgtcat
gaactcatctccactctgatgccaatattccttggaaatcatcctaattctgccattatt
ttgcactatgcatggcatgggcaggtaagacatggtcatttgctcatgattgccttgtca
atgctgctaaatggcactccatttgcctttgttattgaccttgctgcacttgcttcacgt
cgtgaatacctcaaacttgacaaatggctcacagataaaataagagagcatggggagcct
tttattcaagcatgcatgactttcttaaagagaagatgtccttctattttgggtggactt
gccccagagaaagaccagcctaagagtgctcaacttcctcctgaaactctggcgacaatg
ttggcttgtctacaggcttgtgcggggagtgtttctcaggagttatcagagaccatcctc
accatggtagccaattgtagtaatgttatgaataaggccagacagccaccacctggagtt
atgccaaaaggacgacctcctagtgcgagtagcttagatgccatttctcctgttcagatt
gacccccttgctggaatggcatctcttagtataggtggttcagctgctcctcacacccag
agcatgcagggctttcctccaaatttgggttctgcattcagtacccctcaatcaccagca
aaagcatttccacctctttcaaccccaaatcaaacaactgcattcagtggtattggagga
ctttcatcacagcttccagtaggtggtcttggcacaggcagcttgactggtataggaact
ggggctcttggacttcctacagtgaataatgatcccttcgtacagagaaaactgggcacc
tctggactcaaccagcctacattccagcagagtaagatgaaaccttccgacttatctcag
gtgtggccagaggcaaatcagcactttagtaaagagatagatgatgaagcaaatagctat
tttcagcgaatatataatcatccaccacatccaaccatgtctgttgatgaagtattagaa
atgctacagagatttaaagactcaactataaaaagggaacgagaagtatttaactgtatg
ctaaggaacttgtttgaagaatatcggtttttcccccagtaccctgataaagagttacat
ataacagcttgcctgtttggtggcataatagaaaaaggactagtcacttacatggcactg
ggtctggccctgagatatgtccttgaagccttacggaaaccttttggatccaaaatgtat
tattttgggattgctgcactagatagatttaaaaatagattgaaggactatcctcagtat
tgccagcacttggcttccatcagtcactttatgcagtttccgcatcatttgcaggagtat
atcgagtatggacaacaatctagagatccacctgtgaaaatgcagggctctatcacaacc
cctggaagtattgcactggctcaggcccaggctcaagcccaggttccagccaaagctcct
cttgctggtcaggttaacactatggtaaccacctcaaccaccaccactgttgctaaaacg
gttacagtcaccaggccaactggagtcagctttaagaaagacgtgccaccttccatcaat
actacaaatatagatacattgcttgtggccacagatcaaactgagagaattgtggagccc
ccagaaaatattcaggagaaaattgcttttatcttcaataatctctcacagtcaaatatg
acacagaaggttgaagaacttaaagaaactgtgaaggaagaatttatgccttgggtttca
cagtatctggttatgaagagagtcagtattgagccaaactttcacagcctgtattcaaac
ttccttgatacactgaagaatcctgaatttaataagatggttctgaatgaaacctacaga
aatatcaaagtgctcctaacctctgataaagctgcagccaatttttcagatcgttctttg
ctgaagaatttgggacattggctgggaatgatcacattagctaaaaataagcccatctta
catactgatttggatgtgaaatctttgctgctagaggcttatgttaaaggacagcaagaa
ttgctatatgtagtgccctttgttgccaaagtcttagagtccagcattcgtagtgtgatt
cccttgttccaggcccatccacagttgaaacagtgtgtgcgtcaagcaatcgaacgggct
gtccaggaactggttcatcctgtggtggatcggtcaattaagatcgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattcggaggaatctcgaatgcgaatagca
gcgcatcacatgatgcgtaacttgactgctgggatggctatgattacttgcagggaacct
ttgctgatgagcatatctacaaacctaaaaaacagttttgcctcagctcttcgtactgca
tccccacaacaaagagaaatgatggaccaagcagctgctcaattagctcaggacaattgt
gaattagcttgttgttttattcagaagactgcagtagaaaaagcaggcccagagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgaagatac
tgtgatcctgttgtattaacataccaagctgagcggatgccagaacagatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagttcgcacgaaatgtgcct
ggcttcttgcctacaaatgacctaagtcagcctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcaaatttatgataagtgcattacagaactggag
cagcacttacatgctataccaccaactttggctatgaatcctcaagcccaggctcttcga
agtcttttggaagttgtagtgttatcacggaattctcgggatgctatagctgctcttgga
ttactccagaaggctgttgagggattattagatgccacaagtggtgctgatgctgaccta
ctgctgcgttaccgagagtgccacctcttggtactcaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatacaatgtggaggcagtggagttgttaatacgaaatcatttggtaaacatgcaa
cagtatgaccttcacctagctcagtcaatggagaatggtctaaactacatggccgtggca
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgtttcacaccattgaaactctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtggtacgatccaactatgaagcaatg
attgatcgtgctcatggaggccccaactttatgatgcattctgggatctctcaagcctca
gagtatgatgaccctccaggcctgagggagaaggcagagtatcttctaagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcatcagcaaggaatactgaagactgatgacctcataacaagattttttcgt
ttgtgcactgaaatgtgtgttgaaatcagttaccgtgctcaggctgagcagcagcacaat
cctgctgctaatcccaccatgatccgagccaagtgttatcacaatctagatgcctttgta
cgactcattgcactgttagtgaagcactcaggggaggctaccaatactgtcacaaagatt
aatctgctgaacaaggttcttggtatagtagtgggagttctcctacaggaccatgatgtt
cgacaaagtgaatttcagcagcttccctaccatcgaatttttatcatgttgctcttggaa
ctcaatgcacctgagcatgtgttagaaactattaatttccaaacacttacagctttctgt
aatacattccacattttgaggcctaccaaagctcctggctttgtatatgcctggcttgag
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggc
tggcctatgtatgcgcagctactgattgacttattcaaatatttagcaccttttcttaga
aatgtggagctcaccaaacctatgcaaatcctctacaagggtactctaagagtgctgctg
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atcccacccaattgtatccagttaagaaatttgatcctgagtgccttcccgagaaacatg
aggctcccagacccattcactcctaatctgaaggtggacatgttgagtgaaattaacatt
gctccccggattcttaccaatttcactggagtgatgccacctcagttcaaaaaggatttg
gattcctatcttaaaactcgatcaccagtcacttttctctctgatctgcgcagcaatcta
caggtatcaaatgaacctggcaatcgctacaacctccagctcatcaatgcactggtgctc
tatgtagggactcaggccattgcacatatccacaacaaaggcagcacaccttcaatgagt
accatcacccactcagcacacatggacatcttccagaacctagctgtggacttagataca
gagggccggtatctcttcttgaatgcaattgcaaatcagctgcggtacccaaacagccac
actcactacttcagctgcaccatgctgtacctttttgccgaggccaacacggaagctatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattactttcattgagctgattaaaaatccagcgtttaagttctggaaccat
gagtttgtacactgtgccccagaaatcgaaaagttattccagtcagttgcacagtgctgc
atgggacagaagcaggctcagcaagtaatggaaggaactggtgccagttag
DBGET
integrated database retrieval system
