Oryza sativa japonica (Japanese rice) (RAPDB): Os02t0179300-01
Help
Entry
Os02t0179300-01 CDS
T02163
Symbol
Os02g0179300
Name
(RAP-DB) Similar to RAD23 protein, isoform II.
KO
K10839
UV excision repair protein RAD23
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03420
Nucleotide excision repair
dosa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Os02t0179300-01 (Os02g0179300)
09124 Replication and repair
03420 Nucleotide excision repair
Os02t0179300-01 (Os02g0179300)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
dosa03051
]
Os02t0179300-01 (Os02g0179300)
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os02t0179300-01 (Os02g0179300)
Proteasome [BR:
dosa03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
Os02t0179300-01 (Os02g0179300)
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
Os02t0179300-01 (Os02g0179300)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
CUE
TECR_N
UBA_3
Ubiquitin_4
KIP1
Dsc3_N
MCM_N
Motif
Other DBs
RAP-DB:
Os02t0179300-01
LinkDB
All DBs
Position
chr02:join(4408232..4408297,4408938..4409099,4409759..4409797,4409873..4409940,4410027..4410071,4410481..4410658,4410743..4410874,4410947..4411012,4411501..4411548,4411657..4411766,4412047..4412128,4412235..4412348)
AA seq
369 aa
AA seq
DB search
MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE
ENKVSEVGFLVVMLSKSKASGSSGALSSLTSSTPLTRQETPADASRAAPQPLVAPTRTPQ
PERPPAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAAYNNPERA
VEYLYSGIPITAEVAVPAGGQGANTTEPSSTREASLSGIPNASPLNLFPQGDANDGGGAG
GGTLEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPF
DGADGDFLDQPDQDEMPHSINVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANY
LLEHAADED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacggtgaagaccctcaagggcacccagttcgagatccgggtgcagcccaac
gacaccattatggctgtcaagaagatcattgaagagatacaaggaaaggatagctaccca
tggggccaacagttgctgattcacaatggcaaggttttgaaagatgaaagtacattggaa
gagaacaaagtcagtgaagttgggtttttagttgtcatgcttagtaagagtaaagcttct
ggttccagtggagctttaagttcactgacttcaagcacccctttgaccaggcaagaaact
cctgcggatgcttcacgagcagctcctcaacccctagttgcacctacaagaacaccccag
cccgaaaggccacctgcggaagccccttcaaacgcatatggtcaagcagcatcaaatcta
ttgtcgggaagcaatcttgacactacgattaaccagctgatggaaatgggtggtggcagt
tgggacagagataaagtccaaagagctctacgtgcagcttataacaacccagagcgtgct
gttgaatatctatattctggcattccaattacagcggaggttgctgttccagcaggtggt
caaggggcaaacacaaccgagccatcttctactagggaagccagtctgtctggaattcca
aacgcatccccgttaaatcttttcccacagggcgatgcaaatgatggaggtggtgctggt
ggtggaacacttgagttccttagacataaccaacagtttcaggcgcttcgggaaatggtt
catactaacccacaaatattgcagcctatgctccaggaactgagcaagaagaatcctcaa
cttctgaggttgattcaggagaaccatgatgagttccttcagttaataaatgagcccttt
gatggtgctgatggggacttcttagaccaacctgaccaggatgagatgccccattctatc
aatgtcacacctgaagagcaagaggcgattggacggcttgaaggcatgggatttgacaga
gcacgtgtcatcgaagcattcttcgcctgtgacaggaacgagcaactcgcagcaaattac
cttcttgaacatgctgctgatgaagattag
DBGET
integrated database retrieval system
