Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0809900-01
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Entry
Os03t0809900-01 CDS
T02163
Symbol
Os03g0809900
Name
(RAP-DB) Similar to RNA-binding protein 8A (Tsunagi protein).
KO
K12876
RNA-binding protein 8A
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os03t0809900-01 (Os03g0809900)
09122 Translation
03013 Nucleocytoplasmic transport
Os03t0809900-01 (Os03g0809900)
03015 mRNA surveillance pathway
Os03t0809900-01 (Os03g0809900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03t0809900-01 (Os03g0809900)
03041 Spliceosome [BR:
dosa03041
]
Os03t0809900-01 (Os03g0809900)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os03t0809900-01 (Os03g0809900)
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os03t0809900-01 (Os03g0809900)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_7
Motif
Other DBs
RAP-DB:
Os03t0809900-01
LinkDB
All DBs
Position
chr03:join(33894865..33895120,33896214..33896350,33897700..33897842,33899237..33899294)
AA seq
197 aa
AA seq
DB search
MAAAAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQGVMRSRGRLLGRST
SVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGHVKDLH
LNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFSRGPIQKLTSTRP
LHRRSRTPPRRLAALTC
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggaggacgtggagttcgtcgactacgaccgcgacgaggaggaggag
gaggacgccatggacgaggacgatcggggcggtggccgcggcgggcgcgcgctacccgta
ccccacatcgtctcccagggcgtgatgcgctcgcgcggccgcctcctcggccgcagcacc
tccgtgctcgcctccaaccgcgaccgcttcgactccctcgccgatgccggcaaccccggc
cacggcccacagcgctctattgaaggatggatactactggtctctggagtcaaagaagac
gcggaagaagatgatctgtacaacactttcagtgattttggtcatgttaaggacctacat
ttaaatctggaacgccgcactggatatgccaagggatatgcattagttgaatatgaaagt
tttgaggaagcacaaactgcaatcaaagcaatgaatgggactcagctgttaacaaggact
gtctatgttgactgggcattcagcagaggtcctatacagaaactcaccagtacaaggcca
ttacatcggcgatctcggactccacctcgcaggcttgctgccttgacatgttga
DBGET
integrated database retrieval system
