Oryza sativa japonica (Japanese rice) (RAPDB): Os05t0149800-01
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Entry
Os05t0149800-01 CDS
T02163
Symbol
Os05g0149800
Name
(RAP-DB) EF-Hand type domain containing protein.
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os05t0149800-01 (Os05g0149800)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dosa01009
]
Os05t0149800-01 (Os05g0149800)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os05t0149800-01 (Os05g0149800)
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os05t0149800-01 (Os05g0149800)
Protein phosphatases and associated proteins [BR:
dosa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
Os05t0149800-01 (Os05g0149800)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
Os05t0149800-01 (Os05g0149800)
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
Os05t0149800-01 (Os05g0149800)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_8
EF-hand_5
SPARC_Ca_bdg
EF-hand_13
IGFBP
Motif
Other DBs
RAP-DB:
Os05t0149800-01
LinkDB
All DBs
Position
chr05:join(2845807..2845978,2847197..2847288,2847511..2847573,2847696..2847794,2848123..2848281,2848817..2848888,2848964..2849096,2849210..2849274,2849413..2849488,2849633..2849734,2849921..2850113,2850973..2851213)
AA seq
488 aa
AA seq
DB search
MSTASGDGGDGGGGGDGASSAAGGGGRRIPPASSMPWVRNLRRFVGTGAGLGSEALMELE
TKRILLEIFKERQRKSMEAGAIPSFYKKKPEDGSISNRVQKLAKYRFLKKQSELLLNADD
LDAMWVCLRENCVIDDATGAEKMNYEDFCHIATVCTEQIGQKCKRFFSPSNFMKFEKDDS
GRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPNLAQLRDMPS
AFVQMYCRIAARKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQESEEEVTDTEQAENW
FSLTSAQRICDMFLALDKDTNGTLSKQELKEYADGTLTDIFIERVFDEHVRRSKVGGGNS
REMDFESFLDFVLALENKDTPEGLTYLFRCLDLNGRGFLTTADIHTLFRDVHQKWIEGGN
YELCIEDVRDEIWDMVKPADPLRIALTDLLSCKQGGTIASMLIDVRGFWAHDNRENLLQE
EEEQVEEA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgcctccggcgacggcggggacggcggcggcggcggggatggcgcctcgtcg
gccgcggggggcggcgggaggcggatcccgcccgcctcgtccatgccgtgggtccgcaac
ctccgccgcttcgtcggcacgggcgccggcctcggatccgaggccttgatggaactggaa
acaaaaaggatactgcttgagattttcaaggagcgccaacggaagagtatggaagctggt
gccattccaagtttttataagaagaaacctgaagatggatccattagcaatagagttcag
aaattggcaaagtacaggtttctaaagaaacaatctgaacttctgcttaatgctgatgat
cttgatgccatgtgggtttgtctcagagaaaattgcgttattgatgatgctacaggtgct
gaaaagatgaattatgaagacttttgccatattgcaacagtatgcacagagcagatcggc
cagaagtgcaagcgtttcttcagcccttcaaattttatgaagtttgagaaggatgattct
gggagaattgcaatcctaccattttatctttatgttatgcggacagtatctctcacacaa
gcgagaattgatatgagtgagcttgatgaggattctgatggtttccttcaacctcatgaa
atggaagcatacataagagggcttatccccaatttggcacaactgcgtgatatgccatca
gcatttgttcaaatgtactgccgcatagctgcacgcaagttctttttcttctgcgatcca
cacagacgagggaaagcatgcataaagaaagtattgctgagcaattgtcttcaggaactt
atggaactacatcaggagagtgaggaagaggttactgatactgagcaggctgaaaattgg
ttttccctgacgtcagctcagcgcatttgtgatatgtttcttgcacttgacaaagataca
aatggaacattgagcaaacaggagctcaaggaatatgcagatggcacattgactgatatc
ttcattgaaagagtttttgatgagcatgtacgccggagcaaagttggaggtggcaacagt
cgtgaaatggactttgaaagctttcttgactttgttttggctctagaaaacaaagatact
cctgaaggattgacatacctatttagatgccttgatcttaatggaaggggattcctgaca
actgctgatatccatacattatttagggatgtacaccagaaatggattgaaggcggaaac
tatgaactttgcatcgaagacgtgagggatgaaatctgggacatggtaaagccggcagat
cctctcaggatcgcactaacagatcttctatcttgcaagcaaggcgggactattgccagc
atgcttatagatgtgcgcggcttctgggcccacgacaacagagagaacctcctccaggaa
gaggaagagcaagtggaagaggcctga
DBGET
integrated database retrieval system
