Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0145100
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Entry
Os06g0145100 CDS
T02163
Name
(GenBank) Similar to Pectate lyase homolog (EC 4.2.2.2)
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os06g0145100
Enzymes [BR:
dosa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Os06g0145100
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Ortholog
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
BAF18700
RAP-DB:
Os06g0145100
UniProt:
Q0DEM3
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Position
6
Genome browser
AA seq
348 aa
AA seq
DB search
MATNPIDRCWRCRDDWATDRKRLARCVRGFGHRTVGGAAGKIYVVTDASDDEMVIPRKGT
LRYGVIQDRPMWIVFARDMIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIH
NVHIHHSVPHGGGMIRDSKRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNCSDGLIDAVS
GSTAITISNGHFTKHDHVMLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNN
DYTHWLMYAIGGNMNPTIISQGNRFIAPDDLNAKEVTKREYTPYDEYKEWVWKSQGDVMM
NGAFFNESGGQNERSYDQLDFIPAKHGKYVGQLTKFAGTLNCHVGMPC
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaccccatcgaccgctgctggcgctgccgcgacgactgggccaccgaccgg
aagcggctggcgcggtgcgtccgtgggttcggccacaggaccgtcggcggcgccgctggc
aagatctacgtggtgaccgacgccagcgacgacgagatggtcatcccgaggaaagggacg
ctccggtacggcgtgatccaggaccggccgatgtggatcgtgttcgcgcgcgacatgatc
atccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccgtggcgcg
caggtgcacatcaccggcgcccagatcacgctccagggcgtccagcatgtgatcatccac
aacgtccacatccaccactcggtgccgcacggcggcggcatgatccgcgactccaagcgc
cactacggcctccgcacgcgcagcgacggcgacggcatctccatcatgtcctcctccaac
atctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccgtcagc
ggctccaccgccatcaccatctccaacggccacttcaccaagcacgaccacgtcatgctc
ttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcgttcaac
cacttcggcaagggccttgtgccgcgctgcaggttcggattcttccacgtcgtcaacaac
gactacacgcactggctcatgtacgccatcggtggcaacatgaacccgacgatcatcagc
caggggaacaggttcatcgcgcccgacgacttgaacgccaaggaggtgaccaagagggag
tacacgccgtacgacgagtacaaggagtgggtgtggaagtcgcagggcgacgtgatgatg
aacggcgccttctttaacgagtccggcggccagaacgagcgcagctacgaccagctcgac
ttcatccctgccaagcacggcaagtacgtcggccagctcaccaagttcgccggcacgctc
aactgccacgtcggcatgccatgctaa
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