Oryza sativa japonica (Japanese rice) (RAPDB): Os10g0556801
Help
Entry
Os10g0556801 CDS
T02163
Name
(GenBank) CCR4-Not complex component, Not1 family protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os10g0556801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os10g0556801
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os10g0556801
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os10g0556801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
CSM2
Motif
Other DBs
NCBI-ProteinID:
BAH94996
RAP-DB:
Os10g0556801
UniProt:
C7J7B5
LinkDB
All DBs
Position
10
Genome browser
AA seq
2400 aa
AA seq
DB search
MIPFNSAVAEDVRSLVQGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVA
KSSRLKPELLSTVFKYCLDKPYFSTSFCEALKTVHVSDMFLVKLSNELNLSAGERVGVGL
ALSDSGNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLLNVKEMPFYVPAPIKEGNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADII
TELGYGCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTHVGLGEAHNTYSTFMSAVGNS
QPSDSSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRAC
KDPFPLHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHCSRKMVFPEFANRMQGNQAWY
CLDLLEVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPM
ILKDTTYSSLMNSLWHVNPYLTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAF
SIKLATVAFRQSHSNLEKWLVEKLTAQGETFLEEIMSNTTYEAAEGAVQQPQVMILDICR
ESCPLIIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPDDIEAQAN
IYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYPDTQLKLA
AVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLIEWPQYCN
HILQISHLRATHAELVAAIERVLAKISSSQNEPNVGSMLSADQHGSSSIGNMEASEASWQ
LINPTPTQLERSHQQRHQGFLGERSKGSTNIIQAKNILSSGQMPLASSPGDLAVNLKAAT
TPSSQASPHHSTTVSAPLQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLVAAAERRD
TPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKRASIEPNF
HDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSWLGKFTIG
RNQTLRAKEIDPKILIIEAYERGLMIAIIPFTSKSSIAYRPPNPWTMGILSLLVEIYNLP
NLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKDVSASQAPVVAEVS
SGVMPTINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDDKSALIMPEQVSSL
GLSQVSPSQTPSLSSSSFSLSQLIAAIPRADIYFRINEKLSSFGSLQYSKIMDMALDKAI
KEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLAGSLAHVTSKEPL
RVALSSHLRSLIQGITNNTESTEQIMLILVNDNLDLGCALIETVATRKAVEMIDGEIKQP
FSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRVYEDFITVWHSQSS
QNAGGSATATAMAVAPSNSSVPRVYSPNSALTDSSSFSSHFASASQTTELVHEESDRNAH
LSSLSSKIGASDTSTQVIGTTNVASVFPPMVPNDLPVGEPTTTNKDLVTSAPLSPTTAVD
RMGSVFVEPLNTSDALEMYQQVSQKLDTLIAKDGKDAEIQSVIAEVPDILLRCVSRDEAA
LAIAQKVFRSLYDNASNSNYVTWLLAALVAIRDVCKLVVKELTSWVIYSDEDKKFNIDII
IGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYNVVDALS
KLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFTDA
VGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVA
HSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYSSVDIGPSKGSLFNKILS
VIVRIIQRDAEEKKVSFNPRPYFRLFINLLSELTTSDLHHDSANFQVLTAFANAFHVLQP
LRVPAWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLFKFMEPYLRNAELGQPIH
LLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPN
LKIDLLAEISIPPRIMSDVDGALKSKQMKTQVDEYLKRPDGSFLTDLKQKLLLPQNEANI
AGTRYNVPLVNSLVLYVGMQAVQQLQLNKMNASASAQQMNQSQLDVQIETATELFRNLVM
NSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQITRVLLERLIVNR
PHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARSCGGKGGDDGVGLPDGGH
NT seq
7203 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcaattccgccgtagccgaggatgtccgctccctggtgcagggcgtggac
gactccaccttcgactccacccaccgcgagctctgccagctagcggactgcagtcctgat
ggatgcagtttgctgcttcaagtttgtttggatgaagtgctgctgaatgccgacgtggca
aagagctctcgattgaaacctgagctcttatcaactgttttcaagtattgtctggataaa
ccatacttcagcaccagtttttgtgaagcactgaagacagtacatgtcagtgatatgttc
cttgtaaaattgtcaaatgaacttaatctatctgctggagagagggttggagttgggctt
gccctatcagattctggaaatctaggcttgattacgaaagggcaaaagttctcaatcgct
gaaatcgaggagatatgtgcaaatccagcccatgttttaacaaatgatcaaattcacgat
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattctttcactaac
atcatctccctattaaatgtcaaagagatgccattctatgttcctgccccaattaaggaa
ggcaacgctcggccaacaatttcttcaaggcacatggaactatacactggtagcttggat
gatgattttgattcccttctatctgaaattgggaaagaaataagcatggctgacatcatt
actgaattaggctacgggtgtacttcagatattgctcattgtaaagaaatactgtcacta
tttgagcctcttgatgatatgggaatctctaagttgcttggagcagttgtttgcactcat
gttggtcttggtgaagctcataatacatattcaacgttcatgtcggccgttggcaacagc
caaccaagtgactcatctcaatttactgcatggaatattgatgttctcgtggattcaatt
aatgaaattgccccaagaactaattggattactgtagtggaaaatcttgatcatgagggt
ttctgtatccctgatgaagcggcattttgtttgctgatgtctatatattctcgggcctgc
aaggatccatttcctcttcatgctgtctgtgggtcactgtggaagaatacagaaggacaa
ttatcattcttgaaacatgcggtggctgcgccaactgatacatttacattcaaacattgt
tccaggaagatggtatttccagaatttgctaaccgcatgcaaggcaatcaggcttggtac
tgcctggaccttctagaggttttatgccaacttgctgaacttggctatgcaacaatggtt
cggtcaatgcttgactacccactgattcattgccctgatgttttacttcttggtgttagc
cacatcaatactccatataatctcctccagtatgaagtattgtcttgtgttttccctatg
atactgaaggacactacatacagtagtcttatgaactctctctggcatgtcaacccttac
ctcactcttcgtggatttgttgattcacattccgacgcaaattgccttctcagaactgtt
gagatatgtcaagacctaacgatcctatccgcagtccttgattccaccccgtttgcattt
agcatcaagcttgctacagttgcttttaggcaaagtcatagcaatcttgagaaatggttg
gttgaaaagctgactgctcaaggagagacttttcttgaggaaattatgagcaacacaact
tatgaggctgcagaaggtgctgtccaacaacctcaagtgatgattttggatatttgccga
gaatcttgccctctaattataaaggttctgcaatctcactcgggccagctgttatctaac
caacttgtggaggaactaaggagagtggaagcagtgcatgaatcaaggaatcatggtgtt
gtaggaagggatgcccctacttctgagggaggtcctgacgacattgaagcacaggcaaat
atatattttcaccagatgttttctggacagataagcgttgatgctatggtacaaatgctt
gcacgtttcaaagaatctacaaacaagagggagctatcaattttcaattgcatggtttca
aatttgttcgaggagtacaaattcttcccaaagtatccagatacacaacttaagttagca
gctgtgctcatgggatctctcattaagcatcaacttgtggctcacctgggacttggaatt
gctctacgtagtgttcttgatgccttgcgtaaatctatcgattcaaagatgtttatgttc
ggaacaacagcgctagagcagtttatggatcgtctaatcgagtggccacagtactgtaac
catatattgcagatatcacatcttcgtgcaacacatgccgaattagttgctgcaattgaa
cgagtgctcgccaagatatcgtcaagtcaaaatgagccaaatgtaggcagcatgctttct
gcagatcagcatggttcatcatctattggaaatatggaggcttctgaagcatcgtggcag
ctcatcaatccaactccaacacaacttgaacggtcacaccaacagaggcaccagggtttc
cttggggagaggtccaagggctctacaaacatcattcaagccaaaaacattctttctagt
gggcaaatgccacttgcttcatcacctggtgatttggctgtcaatctaaaggctgccaca
acaccatcgtcacaagcttctcctcatcattctaccactgtatcagctcctttacaaccc
actggctttctgcggtctagaagttctgctccttcaggcattcgacaaccttccttcacc
acaggatttggagctgctctgaatattgaaactctagttgccgctgcagaaagaagagat
acaccgattgaggcccctccttctgaagttcaagacaagattttcttcatgatcaataat
atttccacttccaatatggaggctaaggcaagagaatttaacgaggttttgcaagaacag
tattatccctggtttgcgcaatatatggtcatgaaaagggcaagcattgaaccaaatttt
catgatttatacttgaagtttttcgacaaagtcaactcaaaatcattgaataaggaaatg
gttaaagctacatatgagaactgcaaggtcttattacagtccgatctcataaaatctagt
tcggaagaacgttcattgcttaaaaatcttggtagttggctaggaaaattcactatagga
aggaatcaaacattacgagcaaaggaaattgatcccaaaattcttattatagaggcatat
gaaaggggtttgatgattgctattataccattcacatcaaagtcgagtatagcataccgt
cctccaaatccttggacaatgggtattcttagccttctcgttgagatctataatctacct
aatctcaagatgaacctgaagtttgacattgaggtcttgtttaagaatctaagtgttgat
atgaaagatgtgaaaccatcttctcttctgaaagaccgtattcggcaaatagagggaaat
ccagatttttcaaataaagatgttagtgcatctcaagcaccagtagttgctgaggtttcc
tctggcgtcatgcctacaataaaccatgtggaaccacaaccagagataaatagcacttcc
cgtgctacaagccttccaaatatgttgagtcagtatgcagcacctcttcgccttcctaca
aacaatatggtagaagatgacaagtccgctttaatcatgcctgaacaggtttcctctctt
ggtttgagccaggtttcgccatcacaaacaccatcactatcatcgtcttcattttctctt
agccagcttattgcggcaattccacgtgcagatatatatttcagaattaatgaaaagctt
agctcttttggctcgttgcagtatagcaaaatcatggatatggctttggataaggccatc
aaagagattataggtcctgtcattcaaagaagtgttacaatagcgagccgaacaactaag
gaacttattctaaaggattatgcaatggaagcggatgatagtgccgtatctcgttctgca
catttgatggtcggtacactagctggaagtcttgcccatgttacatccaaggaacctctt
cgtgttgctttatcatctcatcttcgtagtcttattcagggcataactaataatactgaa
tccacagagcagattatgcttattcttgtcaatgataatctggatcttggatgtgcccta
atagagaccgttgcaacacgcaaggctgttgagatgatcgatggggaaatcaagcagccc
ttttcacaactaaggagacaaaaagaactacttggatctgcatattatgatgcttttcct
tacactcaaggtcttaagcgtgttccggatgctcttcgtcctaagcctactggccattta
tctgctgcccaacgacgagtgtatgaggacttcattactgtatggcacagtcagagtagt
caaaatgcgggtggttcagctactgctacagcgatggcggtcgctccaagcaattccagt
gtacctcgagtttacagtccaaattcagcactgacagactccagtagcttttcctcccat
tttgcatctgcaagtcagactacagaactggtacatgaagaatcagatcgcaatgcacac
ctttcaagcctttcttcaaaaattggcgcgagtgacacatctacccaagttattggaacc
acaaatgttgcatctgtttttccgcctatggttcccaatgaccttccagtgggtgaacca
acaaccacgaataaagatcttgttacttcggcaccactttcacctacaactgctgttgat
cggatgggatctgtttttgtggaacctttgaatactagtgatgcgctggagatgtaccaa
caagtttcacaaaagctggatactttgatcgcaaaggatggcaaagatgcagaaattcag
tctgtcattgcggaggttcccgacatcttactcagatgtgtcagtcgagatgaagctgcc
ttggctattgcacagaaggttttcagaagtttgtatgacaatgcatcaaacagtaattat
gtcacatggctcctagcagctttggtcgcaatacgtgatgtttgcaaacttgtcgtcaag
gagttaacgagctgggtaatatattctgacgaagataagaagtttaacatcgacataatt
attggactaattcggtctgaactgattaatcttggggattacaatgttcatttggcgaag
attattgatggcggaagaaacaaggctgcaaccgagtttgctatatcacttgtccagaca
ttgattacccaagaatctattagcatcgcagaggtttataatgttgttgatgccttatca
aaacttgcaatcaggcccagttctcctgaatcgctgcagcagttgattgaaatcgctaga
agttttgcttccgtgaaggatgaaaatattagacagtcaagggataaaaaggttttatcc
ggtcgtcctttggtgaataaagaggaaaataatgctaatgatgttgcgttcactgatgct
gttggttttcaggagaaggtcgcagtatcattctctgaatggtgtaatatatgcgatcat
cccactatgggtgattcagcatacactcattacattgtgaagctgcaacaggatggcttg
ctaaagggagatgatttgaccgaccgcttttaccatattctcacggaacttgctgtggca
cactctgtagtctctgagcaagtagttgctcctggcgggatttctcagcagccaacgcag
caactccagatttcatacttctcaattgattcatattcaaagcttgtggcactggtggta
aagtactcttctgtggatattggaccgagtaaaggaagcctttttaataagattctttct
gttatagttaggattattcaaagagatgctgaagaaaagaaagtttctttcaatcctcgg
ccgtattttcggttgttcataaatttgcttagtgagcttactacttctgaccttcaccat
gatagtgctaattttcaggtgttgacagcatttgccaatgcattccatgtgcttcaaccc
ttgagagttcctgcatggagttttgcttggcttgaattggtaagccacagaagcttcatg
ccaaagctattgctgtgcaatgcacagaagggctggccattcttccagaggttgcttgtc
gatttgttcaaattcatggaaccatatttaagaaatgctgaactgggacaacccatacac
ctgttgtacaaaggaactttgagagtgttacttgtgctactgcatgacttccctgagttc
ctttgcgattaccacttcagtttctgtgatgtcattccccccagctgcattcaaatgcgc
aatgttattcttagtgcttttccacgcaatatgagacttccagatccctctactccaaat
ttaaagattgatcttcttgctgagatttcaattcctccaagaatcatgtctgatgttgat
ggtgccttaaagtcaaagcaaatgaagacacaggttgatgagtacctcaagaggccagat
ggatcctttttaactgatttaaagcagaagttacttctgccgcaaaacgaagcaaatatt
gctgggactcgttacaatgtacctcttgttaattcacttgtgctctatgtgggcatgcag
gctgtgcaacagttgcagcttaataaaatgaatgcatcagcgtcggcgcagcaaatgaac
caaagtcaactggatgtccagattgagacagctacagagctcttcagaaatcttgtaatg
aattcggatacagaaggtcgctacctcctcctcaatgcgattgccaaccagctgcgctat
ccaaacaaccacacacactatttttccttcataattctttacttgttttctgaggcaaac
caggaaatagtccaggagcaaataactagggtacttctggaacggctaatagttaaccgc
cctcacccgtgggggctactaattactttcattgagcttataaagaatccacgctacagt
ttttgggctcgatcatttactcgctgtgcacctgagatcgagaagctgttcgagtctgtt
gcaaggtcttgtggaggaaaagggggagacgatggagttggtctccccgatggtggccat
taa
DBGET
integrated database retrieval system
