Dendroctonus ponderosae (mountain pine beetle): 109534470
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Entry
109534470 CDS
T04899
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109534470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109534470
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109534470
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109534470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
CSN7_HB_subdom
Motif
Other DBs
NCBI-GeneID:
109534470
NCBI-ProteinID:
XP_019755711
UniProt:
A0AAR5P540
LinkDB
All DBs
Position
Unknown
AA seq
2366 aa
AA seq
DB search
MNLDSLSLALSQIGYLVVTLTKKNYQQVVDELIKIVNLHGLEADRHLFQCLYGAVDFSEA
NSKSQAFLDQSGRVLNTPALLTIICHITNFPLTNEKKNLKLGSQFFTQFTKCLRLSSVRE
VLFALVLRNSTFPEIASAAHSHLRTAVPQLVRSYIDTGGNRQYEESLQETSPELLHLILS
SILESPKEVGLTNDIHTTFLNSLQRDFPRDQVPVVLAPLVYPEQAELFSEMSSDGPGLSG
GTLDSSLSDLVKELGYIFTSTLEECRNSIIKLGGRDIAPSTVARVLAVMCRTHTGLDDAL
GAFKGSEVRSWNIEIFVQALKEISPSLQWNNVVSELDHPEFVIKDRQGLCILISVLRQGF
QSLGFHPDTTFPVDQFYKRWINVEGHFSLIQQALKNPDVFCFGDYACASVALDALKTPPE
QDGKEFSNWRSLNLVELLLSMSECGLYAAVQDLFKAPIHSCPDVLLLALLQISGPITLLR
QELLTNLIPIFLGTHPNSGILLHHAWHTQTLNVKPIIMHAMSEWYTRGECDQTRLSRILD
VAQDLKALSMLLNAQSSQSYPFIIDLACLASRREYLKLEKWLSDKISDNGEGFITACVKF
LHRRCPQLGKEDSLTKPVPHLPVETLSTIIFCLQRCITNVNPELHEAIVSVINGCSMALK
SRQQNSNPLMRARGMDGNAMNQTVFAGQLYGHAGVEQLQNLGTNLSNMTLAGPSNNAFNL
QGGLGPIVQSPGSPSRLLGSGPSNSPFPIIPMQHQGPVGTSSSLVLGINPINNIGRIGPV
ANMEKSRAQEYNPFPEGASHVSKDIEDEANNYFQRIYNHPPQANLSIDEVLVMLKRFQDS
PSKREKEVFNCMLRSLFEEYKFFPQYPDKELHITAQLFGGIIERGIVASYVTLGLALRFV
LEALKKPEGSKMYYFGITALDRFKGRLKEYHKYCEHVRTVQHFSEFPPHLQEYIEFGLQG
LEPPTKPEGPVLPASLAAMLAPPSANVQVYKGASTVGSAISSTKSSTTPGSTISTRPSIA
NATNIDTLLVATEKEEKIIAPPDTLQDKIAFIFNNLSQLNLKVKCDELREHISDEYYPWL
SQYLVMKRASIESNFHSLYSNCVDTLNIIELYKMVVKETFRNIRVLLSSDKAIANFSDRS
LLKNLGHWLGMLTLSHNKPILQIELDLKSLLVEAYHKGPQELLYVVPFVAKVLESCSKSK
VFKPPNPWTMALMNVLAELHSESNLKLTLKFEIEVLCKNLEIDVGQLKPAIYLKDPERIR
KIEYQLSQPIKKEQNMSAHGNQSTNMAEPELVNIIADRNSSSPAMHNISTTPTPGLAMPE
PRFSYGDIVTNSMQAIQTHAVISSNAVLFQTQPQLKALAKKAIELAVQEWLPPVLDRSVK
IALQTCEAIIRKDFALEPDEEKMRIAAHLMARNLTAGMAMITCRDQLLSSINTHMKQLLN
TNLVTPSIQQKEMIDQAANVIANDNTELACAIVQKTAIEKAIPEIDKHLSGEYELRRIAR
KESMWVPQSNIRYCDNSALTYQAERMPEQIRLKVGGLTSSQMAVYEEFGRNIPGFLPNER
DTTLVSIQAPILNSLDTQPQPVSSYPMAVVGDFAIHLQKYVQDIEQFVSLIGSQSNAVLN
DRMMRLRLCIISSSRVRDVNVTPPQALVQKCVETLQDCLHPNMSETDPVVLRFKEIVLKI
LKTIQGIFSQEWVTKLVTRCLIETREEQRYNLEAVDTLIKASLVNVPQYDLALAQVLEAN
FNYIGQNFAIQLVEHFLINERPAQFSGQEFEFPNTVDFLVKIQNHTRQPPDGLNTILDLL
RQNQDSTFCGDRSIGPTVHIHSGILQVDEVRTPNYEDPPGLVDKTEYLIREWINIYTTHQ
GRDSTKSFSVFVHQMNLHGILKTDDLITRFFRLSTQICIDTCYRILCDKSTLNSTGGRSK
CYHTLDAFVRLVALLVKHSGESSNTTTKVQLLNKVLGIVAGVLLQDHDNRLGEFHQMPYQ
RVFTMLFLELNAPEPVLEALNFHVLTAYCHTFHILRPAKAAGFCYAWLELISHRVFIGRM
LATTPQQKCWPLYSQLLVDLFKYLAPFLRNAELAKPVTMLYKGTLRVLLVLLHDFPEFLC
DNYYGFCDVIPPNCIQMRNLILSAFPRTMRLPDPFIPNLKVDMLPEITYAPRILTNIAAT
ISPPQFKKDLDSYLKARAPVTFLSELRSNLQVSNEPGIRYNISLMNALVLYVGTQAIAYI
KNKSHSPSMSTIAHSAHMDIFQNLTVDLDTEGRYLFFNAMANQLRYPNSHTHYFSCTFLY
LFAEANTEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYKFWQHQFVHCAPEIE
KLFESVARSCFVKTTVQLSQEGEIHE
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttgattcgttgtctcttgccttgtcacaaatcggttatttagttgttacatta
actaaaaagaactaccaacaagtagtggacgaactaattaagattgtaaacttgcatggt
ttagaagcagatcgtcatctattccaatgtttatatggtgctgttgacttcagtgaagca
aacagcaagtctcaagcatttctagatcaaagtggtcgagttttgaatactcccgcctta
ttgacgatcatttgccatattaccaattttccactgacgaacgaaaagaagaatctgaaa
cttggatctcagttcttcacacagttcactaagtgtcttcgattatcatccgtacgggaa
gtactttttgcattagttctacggaactctacgtttcccgagatagctagtgctgcacat
agtcatcttcgaacagctgtaccccaattagtaagatcttacattgataccgggggaaac
cgacaatacgaagaaagccttcaggaaaccagtcctgaactgctgcacttaattttgtca
tcaattttagagagtccgaaagaagtaggactaaccaacgatatccacacgacttttcta
aacagtttgcaacgcgattttcctagagatcaagttcctgttgttctagctcctttagtt
tacccagaacaagcagaactgttttcagaaatgtcttcagacggacctgggttgtctgga
ggtactctagattcatccttatcggatttagtcaaagaattgggatatattttcacatca
accttagaagaatgtcgcaattcaattataaagctcggtggtcgggatattgctccctcc
acagtagccagagtcttggcggttatgtgccgaacccacacaggactagatgatgcatta
ggagctttcaaaggatcagaagtgagatcatggaacatcgaaatatttgttcaagcactg
aaggaaatttcgccatcgcttcaatggaacaatgttgtttctgaactggaccatcccgaa
ttcgtcattaaagatagacaagggttgtgcattttgattagcgttcttagacaagggttt
cagtcattaggatttcatccagatacgacgtttccagttgatcagttttacaagcggtgg
attaatgttgaaggtcactttagtttgattcagcaagcactaaaaaatccagacgttttt
tgctttggtgattacgcatgtgcttcagtggctttggatgcgctgaaaacgcctcctgaa
caggatggaaaagagttttccaattggcgatctctcaatcttgttgagttgttgctgagt
atgtccgaatgtggactgtatgcagcggttcaggaccttttcaaagcacctattcatagc
tgtccagatgtgctgctgctagcacttcttcagatttctggacctataactttactacgc
caagaactattgaccaatttgattcccattttcttgggcacgcatccaaactctggaatt
cttttacaccacgcctggcatacacagactctcaatgtcaaacctattattatgcacgct
atgtctgaatggtatactagaggcgaatgtgatcaaaccagattatcaaggattttggat
gttgctcaagacctgaaggctttgtcaatgctgttgaatgcacaatcgtctcagtcatat
ccattcataattgatcttgcgtgtttagcttctcgacgagaatacttgaagctagaaaag
tggctctctgataagatcagcgataatggggaaggctttattacagcttgtgtgaaattt
ttacatagacgatgtccgcaattaggaaaggaagacagtttaactaagccggttccccat
ctgccggtcgaaactttatcaactattattttttgcctgcaaagatgcataaccaatgtt
aaccctgaattgcatgaagccattgtcagcgtgatcaatggttgctcaatggcgttaaaa
agcagacaacagaatagcaaccctttaatgagagcaaggggtatggatggcaatgctatg
aatcagacggtgtttgcagggcaactttatggtcatgctggagtggagcagttgcaaaat
ttaggcacaaatttatcaaatatgactttagcaggtcccagtaataacgcttttaacctg
caaggcggattaggcccgatagtccagtctcctggttctccctccagactactaggtagt
ggcccctcaaatagtccgtttccgattattccaatgcaacatcaagggccagttggtacc
agttcttctttagtacttggtatcaaccccattaataatattggacgaataggccccgtg
gctaatatggaaaagtctcgagcacaagaatataacccatttccggaaggagcatcccat
gtttcaaaagacattgaggatgaagctaacaactatttccaaagaatttataatcatcca
ccacaggctaatctctcgattgatgaagtattggtcatgttgaaaagattccaggattct
ccaagtaaaagggaaaaggaagtatttaattgtatgttgaggagcctcttcgaagaatac
aaatttttcccacaataccccgacaaagaactgcacatcaccgcccaattatttggtgga
ataatcgaaagaggtatagttgcctcttacgtaacgttaggtcttgctttgagatttgta
ttggaagccctgaagaaacctgaaggttcgaaaatgtactatttcggaattactgctttg
gatcgtttcaaagggagacttaaagaataccacaaatattgtgaacatgtcagaacagta
caacattttagcgaatttcctccgcatttgcaagagtacatcgagtttggacttcagggg
ttagaaccgcctacgaaaccagagggtccagttttacctgccagtttagcagcaatgcta
gcgcctccaagtgctaacgtacaggtttataaaggagcctccacggtaggaagcgcaatt
tcatctacaaaatctagtactacaccaggaagcacaataagcactagaccgtcaatagct
aatgctacaaacatagacacgctgcttgtagctacagaaaaggaagaaaaaataattgct
ccaccggatacactgcaagacaaaatagcttttatttttaataacctgagccagttaaac
cttaaggtgaaatgtgacgaacttcgagaacacatatcggatgaatattatccgtggctg
tcccagtatctggttatgaagagagcctcgattgaatcgaattttcacagcttatactct
aactgtgtggataccttaaatataatcgagttgtataagatggttgtaaaagaaacattt
agaaacattcgcgtcctactcagttcggacaaagcaatagccaatttttcagacaggtct
ctgctgaaaaatctgggccattggttgggaatgttaactctcagtcataacaaaccgatt
ttgcaaatcgaattagacttgaaatctttacttgttgaagcctatcataaaggtccccag
gaactgctatatgttgttccttttgttgctaaggttctcgaatcgtgctctaagagtaaa
gtttttaagcctccgaacccttggacgatggcattaatgaatgtactggctgaactgcat
tctgaatcaaatttaaagctgactctgaagttcgaaattgaagtgttatgcaagaatttg
gaaattgatgtaggtcaactgaagcctgcaatttatctgaaggacccggagagaataaga
aagatcgagtaccaattatctcagccgatcaaaaaagaacaaaatatgtctgctcacgga
aaccaaagtacaaatatggcggagcctgaactagtgaatattattgccgaccgcaatagc
agttcgccggcaatgcacaacattagcacaacaccgacacccggtttggccatgccagag
ccccgattcagttatggagatatagtgactaacagtatgcaggcaattcaaacgcatgca
gtaatttcatcaaacgctgtcttgttccaaactcaaccccaactgaaggctttagccaaa
aaagccatagaacttgctgtacaagaatggttgccacccgtgttggatagatcggttaaa
attgcccttcaaacgtgcgaagctattattcgaaaagattttgcattggaacctgacgaa
gaaaaaatgcgcatcgctgcccacttaatggcacggaatttaacagcaggaatggcaatg
ataacctgtcgtgatcagcttttatcttccataaatacacatatgaaacagctgcttaat
acgaatttagttactcccagtattcaacaaaaggaaatgatcgaccaagctgccaacgtg
attgctaatgataacacggaactggcttgtgctatagtgcagaaaactgcaatcgaaaaa
gctattcctgaaatagacaaacatctaagtggcgaatatgagcttcgaaggattgcccga
aaagaatcaatgtgggttccgcaaagtaatatacgctattgtgataactcggctttgaca
tatcaagctgaacgtatgccggaacagattcggttgaaagttggaggcctaactagtagc
caaatggctgtttatgaagagttcgggcgcaacataccaggatttctgccgaacgaacga
gatactactcttgtatctattcaggctccgatcttaaattctttggatactcaaccgcaa
ccggtttcatcatatccaatggcagtagtcggtgattttgctattcacttacaaaagtat
gtccaggacattgaacaatttgtatctctcatcggctcccagtcaaatgcagttttgaat
gatcgaatgatgcgtctgcggctgtgcataataagttcatcacgagttagggatgtaaac
gttaccccaccacaagctctggttcaaaagtgcgtggagacccttcaggattgtttgcac
ccgaatatgagcgaaacggatcccgttgtgttgcgattcaaagaaattgtcttgaaaatt
ttaaaaactattcaaggaatcttcagccaagaatgggtcaccaaattggtaacaagatgt
ttgattgaaactcgtgaagaacaaagatacaatctggaagctgttgacactctcatcaaa
gcctcattggttaacgtgcctcaatatgatttggcattagcccaagtactagaagcgaac
ttcaactatattgggcaaaatttcgccatccagttagttgagcactttctcataaatgag
aggcctgcacaattcagcggtcaggaatttgagtttcccaatacagtcgacttcttagta
aagatacagaatcacactagacaaccaccggatggactaaatacaattttagatttatta
agacaaaaccaagatagcacgttttgtggagaccgctcgattggaccaactgtacacata
cactccgggatattgcaggtagatgaggtgcgcactccaaattacgaagatcccccagga
ctagtagacaaaactgagtacttaatcagagaatggattaatatttacactactcatcaa
ggtcgcgattcgacaaagtctttcagcgttttcgtgcatcaaatgaatttacacggaatt
ttgaaaacggacgatctcattactagattctttcggttgtcgacgcagatatgtattgat
acgtgctaccgaattttgtgtgacaaatccactcttaattcaactggtggaagatctaaa
tgctatcatactttagatgcatttgttcggttggtggctctgcttgtgaaacattcagga
gaaagctccaatacaactactaaagttcaactgcttaataaagtgctggggatagttgcc
ggagtactcttgcaggatcatgataatagattgggcgaattccaccagatgccttatcaa
cgagtcttcacgatgctctttttagaactaaatgctccagaaccagtgttagaagctctc
aattttcacgttctgactgcatactgtcacaccttccacattctccgacctgcaaaagcc
gccggcttttgttatgcttggctagaactcatttctcatcgagtttttattggacgaatg
cttgctacgacacctcagcagaaatgctggccgttgtattcacagttgcttgttgaccta
ttcaaatatttggccccattcttgcgcaacgctgaactggcaaagcctgtgacaatgctg
tacaaaggtactctgagggtactattagtgcttcttcacgatttccctgaattcttatgt
gataattattacggcttctgcgatgtaattccacccaactgcattcaaatgcgaaacctg
atattatcggcctttccacgcactatgagattgccagatccattcatccccaacctcaag
gttgatatgttgcctgaaatcacctacgctcccagaattctaaccaacatagccgcgacg
atatcgccaccacagttcaaaaaagatttggattcctatttaaaggcaagagctccagtc
acttttctgtccgagcttaggagcaatctgcaagtgtccaacgagccgggaattcgatac
aatatttcactcatgaatgcgttagtattgtatgttgggacacaggctatagcttacatc
aaaaacaagagtcactctccaagtatgtcgacaatagcacacagtgcccatatggatatt
ttccagaacttaacagttgatttggatacggagggcagatacctattctttaatgcgatg
gcgaaccaactgagatatcccaacagtcatacgcactatttctcgtgcacatttttatat
ttgtttgctgaagctaatactgaagtaattcaagagcaaatcaccagggtattgttggaa
cgattaattgtaaacagacctcatccgtggggtcttttaataactttcatcgagctgatc
aagaatcctacttacaagttttggcaacatcagtttgttcattgtgcgccggaaattgaa
aaattgtttgaatcggtcgcccggtcctgtttcgtgaagacaactgttcaattatcacaa
gaaggagaaatacacgagtag
DBGET
integrated database retrieval system
