Dendroctonus ponderosae (mountain pine beetle): 109537783
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Entry
109537783 CDS
T04899
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109537783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpa03041
]
109537783
Spliceosome [BR:
dpa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109537783
Complex C
U5 SnRNP specific factors
109537783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Dynamin_N
Roc
Ras
TniB
Septin
Motif
Other DBs
NCBI-GeneID:
109537783
NCBI-ProteinID:
XP_019760230
EnsemblRapid:
LOC109537783
UniProt:
N6UE82
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MDADLYDEFGNYVGPELDSDDEEEEEREQPDEDEQPEYDDERMEDEPQPMAIVLHEDKQY
YPSSLQVYGPDVETIVQEEDAQPLDVPLIEPVKKKKFQLKEQDLPETTYSMEFLADMMDN
TSLIRNVALVGHLHHGKTTFVDCLIRQTHPTYQDNEEKNLRYTDLLFTEQERGCSIKSVP
VTLLLQDIKNKSYLMNIFDTPGHVNFSDEVTAAMRLCDGIVLFIDAAEGVMLNTERLLKH
AVQEQMQITVCINKIDRLMLELKLPPQDAYYKLRHIVEEINGLLTLYSDDANPQIVSPVL
GNVCFASSQYGVCFTLKSFANIYNLYHGDVNVDEFSKRLWGDIYFNPKNRKFTKKAPHNS
AQRSFVEFILEPLYKVFAQVVGDVDSTLPKVLEELGIKLTKNEMKLNIRPLLRLVCNKFL
GDFNGFVNMCVEHIKSPLDNAKTKIDYIYTGPHSSKVYDDMIHCDQEGLLMVHSSKMYPT
EDCTFFQVLGRVMSGTLHAGTDLRILGENYTLQDEEDSRVLTIGRLWVYESRYKVELNRV
PAGNWVLIEGIDQSIVKTATITDLSINDDLYIFRPLKFNTQSIIKIAVEPVNPSELPKML
DGLRKVNKSYPLLTTRVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCE
TVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENESVQIGWNKKKLGEFFQTKYDW
DLLAARSIWAFGPDNTGPNILVDDTLPSEVDKGLLSSVKDSIVQGFQWGTREGPLCEEPI
RNSKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYLFVEVQAPADCVS
AVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHW
QIVPGDPLDKSIIIRPLEPQPATHLAREFMIKTRRRKGLSQDVSINKFFDDPMLLELARQ
DVMLNYPLL
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagatttatacgatgaatttggtaattatgtaggcccagaattagatagtgat
gatgaggaagaagaagaacgtgagcaaccagatgaggatgaacaaccggaatatgatgat
gaacgcatggaagatgaaccacagccaatggcaattgtgcttcatgaggataagcaatat
tatccttcatcattgcaagtgtatgggccagatgttgaaactatagtacaggaagaggac
gctcaaccgttagatgtccctctaatagagcccgttaagaagaaaaagtttcaattgaaa
gaacaagatttgccggaaaccacgtacagtatggagtttctggctgacatgatggataac
acgtcgctgattcgtaatgtagctttggtaggtcacttacaccatggcaaaaccactttt
gttgattgtctcattaggcaaactcatcctacttatcaagataatgaagagaaaaatctg
cgatacacggaccttctttttactgaacaagaacgtggatgctcaatcaagtctgtccct
gtaacattacttttgcaagatattaaaaataagagctacctgatgaatatttttgacact
cctggtcatgtgaacttttctgatgaagtaacagcggccatgcgtctctgtgacggtatt
gtgctttttattgatgccgcggagggtgtgatgttgaacacagaacgtttattaaagcat
gccgtacaagaacaaatgcaaattacggtgtgcattaacaaaattgacagactaatgctt
gaactgaaattaccccctcaagatgcttattataaactgaggcatattgttgaagaaatc
aatggcttactgacgctgtactccgatgacgcgaatccgcaaattgtttcaccagtgtta
ggaaatgtatgttttgctagttcccaatacggagtatgtttcacgttgaaatcgtttgcc
aatatttacaacttgtatcatggagatgtcaatgtggacgagttttccaagaggttatgg
ggagatatttactttaatcccaaaaatcgaaaatttacgaaaaaagctccccataattca
gcgcaaaggagttttgttgaatttatattagaaccactttacaaagtgttcgctcaggtg
gtaggagatgttgattctactttaccaaaagtactggaagaacttggaattaaactcacc
aaaaatgaaatgaagttgaatattcggccgctactcaggcttgtttgcaataagtttcta
ggagattttaatgggtttgtgaatatgtgtgttgaacatatcaaatcaccgctggacaat
gcaaaaactaaaatcgattacatttacacgggcccacattcaagcaaagtatatgatgat
atgattcattgcgaccaagagggacttttaatggttcatagctctaaaatgtacccaact
gaagactgcacattctttcaagttttgggtagagtaatgagcggtactctacatgccggt
actgatcttcgaatattaggagaaaactacaccttgcaggacgaggaagattccagagta
ttaactattggccgattgtgggtttatgagtccaggtataaagtggaacttaatcgtgta
cctgcgggtaattgggtacttatcgaaggaatagatcaatccatcgtcaagacagctacc
attactgatctatcaataaatgatgatttatacatttttagaccacttaagtttaatact
cagagtattataaaaattgcagtcgaacctgtaaatccctccgaattgccaaaaatgttg
gacggattaagaaaggtaaataagtcctatcccttattaaccacgagagttgaagaatct
ggggaacatgtcgtgttgggtactggtgaactttatttggactgcgttatgcacgactta
agaaaaatgtattccgaaatcgacataaaagtggctgatccagtagtagcattctgcgaa
acagttgttgaaacgtccagtttaaagtgttttgcggaaacaccaaataagaaaaataaa
ttaaccatgattgcggaacctctagaaaagggtctggcagaggacattgaaaatgagagt
gtccaaattggctggaataaaaagaagttgggagaattcttccagaccaaatatgattgg
gatttacttgctgctcgaagtatatgggcgttcggaccagacaacaccggtcccaacatt
ctggtagatgacacgcttccttccgaagtagataaaggcctgctgagttcagttaaggat
tcaattgttcagggtttccaatggggaactcgagaagggccgttgtgtgaagaaccgatc
agaaacagcaaatttaaaattctcgatgctgtcatagcacaagagccccttcatagaggc
ggtggacaaatcattcctacagctagaagagtggtgtattcagccttcttgatggccacg
ccccgcttaatggaaccgtacttatttgttgaagtacaggcaccagctgattgtgtatcg
gctgtatatacagtcttagcaaagaggcgtggtcatgtgactcaagatgctccagtgccc
ggatccccattgtataccatcaaagcatttattccggctattgatagtttcggatttgaa
actgacttgagaactcacacacaaggacaggccttttgcctctccgtgtttcatcattgg
cagattgttccgggtgatcctttggacaaatcaattattattcgtcctctagaacctcaa
ccagccacccacttggcgcgagaattcatgattaagactagacggcgaaaaggtttgagt
caagacgtctctattaataagttctttgatgatcctatgttgctcgaattagcacgacag
gatgtgatgttaaactatccactcctttaa
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