Drosophila pseudoobscura: 6898867
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Entry
6898867 CDS
T01032
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6898867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
6898867
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6898867
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
6898867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_1st
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NCU-G1
DUF4327
TFIIA
Motif
Other DBs
NCBI-GeneID:
6898867
NCBI-ProteinID:
XP_004444445
UniProt:
A0A6I8V6Q6
LinkDB
All DBs
Position
3:complement(19635438..19647594)
Genome browser
AA seq
2561 aa
AA seq
DB search
MNVENLKTPPTQLRNLVKHVNKRNFNETSEQINQFIKDHGLEADRSSLRYLFTAINFSDP
SPTVTVQLQAKLLGGQLQRQLQSSSFVSNICFAFDQHFANSQKSLKPSETAELIGQVCRL
TGINKLCECVFALAVTHSSHPELRESARNCLRGSITELLDSYLGNNNSSSATSGLQDISI
DLLQYLLCCLKIYVTPKLHEQFLIKLREEFPRQAVPLILAPFLYGSTTAATSNPVGANAS
ETDAEAEATTTTETETASSSISPSTSSNSCGTDALNEVGIEDIYDHLSEIIFTNQGKNNI
MDTSWINLILEIGYEFTSSVEECKNHLCSRERERTELQPKDVAKIVGLMCRRHSSLLDCN
VNLPTPANFWPGQGQGGGSNSSGGSSQAQATPAQQGQNSSSNSNNNDGASDGGGSSSSDK
KDKKETTDATQTWKPDVFVQALKELVPQLNWKDVCIELDHPEFVLKDRIGLDLLLTILRL
ATQSNIFPHPECIYRHWANTEGQLSLISTLLKNPDLFSFADFVFSQPTLDVLKTAPDADN
KEISAWKSLHLVEVLLSIADKGYYTQVHELFKFPAQNCPDVLFLALLHINPPLTPLRQDL
FNLLIPTFLNNHPNSNVILASAWSSTNFSLRPNIMNAMSEWYLRSSDFDQVKLSRILDLA
QDLKALSSLLNARSFLFIIDLACLASRREYLKLEKWLTDKIRDHGEPFMQAMIKVLLRRC
PQVANAKVPEEQLPPKQAQLLPETVTTMINSLQTCINSCMQPEMVEMIMQMTANVAIMAN
KARAQQQQQQQQQQQPGLVPPPPPSILRHRGMDLPGGIVPPSPQQQQQQQQPFSGSLNAQ
QMFGPGIDPLTNMSNNLAGLNLSGPNGAFNFGNMLTSPSRLMGPGGSPYPLNPMQMPQPL
PPPPNVGNLGRMLPGGPQQPPTPSSAPPTAPNPNNPVMADLQIPVSKEVEDEVNSYFQRI
YNHQPNPTLSIDEVLDILQRFKESSNRREQEVFLCMLRNLFEEYRFFCQYPEKELQITAQ
LFGGIIDRNLVPTFVALGLSLRCVLDALRKPDGSKLYYFGVTALDRFKTRLHTYNKYCEH
IRSIPHFSDFPQHLIQYVEYGMHGQEPPPHKLVGLSNTISALATGPPTEPLYRTSAMQGH
VPATAAPSSGQKPTVAVSHATRMKSIANATNIDTLLVANQEEKVTVPPEPVQDKTAFIFN
NLSQLNIPQKCDEIKEIMTQEYWPWLAQYLVLKRASMEFNFHTLYYNFLDALKNGEINRF
VTKETLRNIKVLLRSDKGVINFSDRSLLKNLGHWLGMMTLGRNRPILQLDLDLKSLLAEA
YHKGQQELLFVVPFVAKILESSAKSKIFRSPNPWTMGIMYVLGELHQEPDLKLNLKFEIE
VLCKTLNLELAKLRPVIYLKDPTRALHIEQQMSQPKPKQTESVPSPAAIQAIQQPPPPQQ
QQQQQQQQQQQQQPPPQQQQQQQQQQQQQPPPPPPAEVDAAQAAAMMMNAAGGGSNNASG
SVASPSLPIDPSQVSLPPPEPRYSYVEVNVTNFQLIAQQLVLPPNIPFLHANPGIKHIVI
NAVERTITDWLQPVVDRSIRIACATTEQIIRKDFALDADENRMRTAAHQMVRNLAAGMAM
ITGKDEIARAISQNLHKAFVSALTGMPSLSEIQAASMQLASENVELVCAFIQKTSAEKAA
LEIDRRLSTDIETRKIAREEGSRFVDAQILSYQQERLPEAVRIKVGAAPATLYAVYSEFA
RTIPGFQQMSDRDIALFAPKPQDLPPPNVFANDDSSMVYAEVAAKMEAFMNTAINVPTLQ
LQAGKMHMLLNALMSTRRLRDQESAFILLTRAVEGLTEGLINVQEHLEQMKLYRDIHLRI
LSLLHNSFGAPNTERAVTKCFFEIREEARFNVEAARALITAHFVNLNQFDGMLRDCMDNG
NNYMAISFGIGLIERLIVEDRAINIVSDNEFMATVELLGRLTQHRHRYPECIVNAIDTLW
SGNFNSTADYSPFNANERSLAGASQYIHSGMLHVRSCDTDDPPGLQEKTEFLLKDWVALY
AQQTQQTTRDARNFGAFVQKMNTYGILKTDDLITRFFRQATNICTDVVYRMFADPSMPIN
QAKNKIFQWIDAFVHLIAMLVRHSGEPGNPTTKINLLNKVLGIVLGTLLKDHEMRGVSFQ
QVGYHRFFMMLFMELCSADVNLDSLMHSIVSAFAYTYHQLKPSVAPGFCFAWLELISHRV
FLGRILVQIPGQKGWPLYAQLLQDLFKYLAPFLRNTELGKPVQLLYKGTLRVLLVLLHDF
PEFLCDYHFGFCDTIPPNCVQMRNIILSAFPRNMRLPDPFTPNLKVDMLSDSSNAPKVLS
SYIVNIKPPNFKKDLDSYLKARAPVTFLSELRGHLQVTSEPGTRYNMTLMNALVMYVGTQ
AIALIRNKNFVPNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFS
CAVLHLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHC
APEITKLFESVARSCLAKSNVTQQLNMAIIDGESQEVGNIN
NT seq
7686 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtagagaacttgaaaacaccgccaacgcagcttcgtaatttggtcaaacacgtg
aacaagcgaaattttaatgaaaccagcgagcaaataaaccagttcatcaaagaccacggc
ctggaagctgatcgtagcagtctgcgctatctgttcactgcgatcaacttcagtgaccca
tcgccgaccgtcaccgtccagttgcaagccaaattactcggtggccagttgcagcgacag
ttgcaaagctcctcgtttgtgtccaacatctgcttcgcgtttgaccagcactttgccaac
agccaaaagtctctcaagccgtctgagacagcagagctcattggccaggtgtgcagactg
accggcataaacaagctctgcgagtgcgtatttgccttggcggtgacccactcatcgcat
ccagagcttcgagaatcggccagaaactgcttgcgaggctccataaccgagctgctcgat
tcctatttggggaacaacaacagctcctcagctaccagtgggctgcaagatatatcgatc
gatcttctgcagtatttgctgtgctgcctcaaaatttacgtgacgccgaagctgcacgag
caatttttgatcaaactacgtgaggagtttccgcggcaggcggtgcctttgattttggcg
ccattcctttacggctcaacgacggcggcgacctcgaatccagttggggccaacgccagc
gaaactgatgcagaggctgaggcaacgacaacgacagagacagagacggccagcagcagc
atcagccccagcaccagcagcaacagttgcggcacggatgccttgaatgaggttggaatc
gaggatatctatgaccatttaagcgaaataatattcacaaaccagggtaaaaataatatt
atggacacatcttggattaatctaatccttgaaatcggttacgaatttacatcgagcgtc
gaagagtgtaaaaatcacctgtgctctcgcgaacgagagcgcaccgaactccagccaaaa
gatgttgccaaaatcgttggtctcatgtgccggcggcactcgtctttgctcgattgtaat
gttaatctaccgacgccagctaatttctggcctggacagggtcaaggcggtggcagcaac
agtagcgggggctcgtcacaagcacaggccaccccagcgcagcagggacagaactcaagc
agcaacagtaacaacaacgatggagccagcgacggtggaggcagctcgtccagtgataag
aaggacaagaaggagacgacagatgccacacagacatggaagccggatgtctttgtgcag
gcactcaaggaactggtgccacagctcaactggaaggacgtttgcattgagctcgatcat
cccgagtttgtgctgaaggatcgcatcggcttggacctgctgttgacaattctgcgactg
gccacacagtcgaacatctttccacatccagaatgcatttaccgccactgggccaacacg
gagggtcagctgtcgctgatctctacgctgctaaagaatccggatctgttctcctttgcc
gactttgtgttcagtcagccaacgctggatgtcctgaagacggcaccggatgcggacaat
aaggagatttcggcatggaagtccctccaccttgtcgaggtcctgctctctattgcggac
aagggctactacacgcaggtccatgagctattcaagttccctgcacagaactgcccggac
gtcctgtttttggcactgctgcacataaatccaccactgacaccgctacggcaggacttg
ttcaatttgctgataccgacgttcctcaacaatcatcccaattcgaatgtgatcctggcc
agcgcctggagctcgaccaacttctcgctgcggccgaacattatgaacgccatgtccgag
tggtatctgcgcagcagcgactttgatcaagtaaagctgtcgcgcattctcgatctcgcg
caggacctgaaggccctctcgtcgctcctgaatgcacgctcctttctgttcatcatcgat
ctggcttgcctggcctccaggcgggagtacttgaagctggagaaatggctgaccgataag
atccgcgatcatggtgagcccttcatgcaggccatgataaaggtgctgctgcggcgctgc
ccacaggtggccaatgccaaggtgcccgaggaacagttgccaccgaaacaggcccagctg
ctgcccgagacggtaaccacgatgatcaattccctccagacgtgcatcaacagttgcatg
cagcccgagatggtcgagatgatcatgcagatgaccgccaatgtggccattatggcgaat
aaggcacgtgcccaacagcagcagcagcagcaacaacaacagcagcccggtctggtgccg
ccaccgccgccgagtattctgcgtcatcgcgggatggatctacccggtggcattgttccc
ccatcaccgcagcagcagcagcaacagcagcagcccttctccggcagcctcaatgcccag
caaatgtttggtcccggcatagatccactcaccaatatgtcaaacaatctggcaggcctc
aatctgagtggaccgaatggagccttcaactttggaaatatgttaacatctccgtcccgc
ctgatgggtcccggaggcagcccctatcctctgaatcccatgcagatgccgcagcctcta
ccgccgccaccgaatgtcggaaatctgggtcgcatgctacccgggggaccgcaacagccg
ccgacaccatcatcggcaccgccgacggcacccaatcccaacaatccggtgatggctgac
ctgcagatacccgtgtccaaggaggtggaggatgaggtgaactcgtatttccaacgcata
tacaaccatcagcccaatccgacgctctcgattgacgaagtgctggacatactgcagcgc
ttcaaggagtccagcaatcgacgggagcaggaggtcttcctgtgcatgctgcgaaacctg
ttcgaggagtatcgcttcttctgccagtatccggaaaaggagctacagatcaccgctcaa
ctgtttggcggcatcatagaccgcaacctggtgcccactttcgtggcgctcggtctctcg
ctgcgctgcgtcctggatgccctgcgcaagccagacggctccaagctctattactttgga
gtgacggccctcgatcggttcaagacacgactccacacatacaacaagtactgcgagcat
atccgctccattccgcacttctcggactttccgcagcacctcatccagtatgtggaatat
gggatgcacggccaggagcccccgccgcataagctggtgggcctgagcaacacaatctcg
gccctagccacaggaccaccgacggaaccgctctatcgcaccagtgccatgcaaggtcat
gtgccggcaactgcagctcccagctccggccagaagcccactgtggctgtgtcgcatgcc
acacgcatgaagtccattgccaatgcgacgaatatcgacactctgctggtggccaatcag
gaggagaaggtgacggtgccgccggaaccggtgcaggacaagacggcctttatattcaac
aatctcagtcagctgaacataccgcaaaagtgcgatgagatcaaggagattatgacccag
gagtattggccatggctggcccagtatctagtcctcaagcgagcctccatggagttcaac
tttcacacgctctactacaactttctcgatgcgctcaagaacggcgagatcaatcgtttt
gtgaccaaggagacactgcgcaacatcaaggtgctgctgcgctccgacaagggtgtgatc
aatttctcggaccgcagtctgctgaagaatctcggccactggctgggcatgatgaccctg
ggtcgcaaccgacccattctgcagcttgacctcgatctcaagtcgctactggccgaggcc
tatcacaaggggcagcaggagctactgttcgttgtgccttttgtggcaaagatcttggaa
tcgtcggcaaagtcgaaaatcttccgatcccccaatccctggacaatgggcatcatgtat
gtgctgggggaactgcatcaggagccggatctcaagttgaacctcaagttcgaaatcgaa
gttctctgcaaaacactcaatctggagttggccaagttgcggccagtcatctacctgaag
gatcccacccgggccctgcacatcgagcagcaaatgtcccagccgaagcccaagcagacg
gaatctgtgccttcgccagcagcaatccaagcgatccaacagccaccgccgccgcagcag
caacaacagcagcagcaacaacaacaacaacagcagcagccgccaccacagcaacaacag
cagcagcagcagcaacagcaacaacaacctcctccaccgcctccagcggaggtggatgcc
gcccaggcggcagccatgatgatgaacgctgctggaggaggctcgaacaacgcatcagga
tcggttgcctcgcccagtctgcccatcgatcccagtcaggtgtccctgccaccgccagag
ccacgctactcttacgtggaggtcaacgtgaccaacttccagctaatagcccagcagctg
gtgctgccacccaacatacccttcctgcacgccaatccgggcatcaagcacatcgtcata
aatgccgtggagcgcaccattaccgattggctgcagcccgtggtggatcgcagcatccgc
atcgcctgcgccaccacagagcagatcatacgcaaggactttgccctggatgcggatgag
aaccgcatgcgcactgctgcccaccaaatggtgcgcaatctggctgccggcatggccatg
attaccggcaaagacgagatcgcgcgcgccattagccagaatctacacaaagcctttgtg
tcggctctgacgggcatgcccagcctctcggagattcaggccgcctccatgcagctggcc
agcgagaatgtggagctggtgtgcgccttcatccagaagacatcggccgagaaggcggcc
ctcgagatcgatcgacgcctttccaccgacatcgagacgcggaagattgcccgcgaggag
ggaagtcgctttgtggatgcccagatcttgagctatcagcaggagcgactgccggaggct
gtgcgcatcaaggtgggcgctgccccggccacactgtatgcggtctactcggagtttgct
cgcaccattccgggattccagcagatgagcgacagggacattgccctgttcgctcccaag
ccgcaggacctgccaccgccgaatgtattcgccaacgatgacagcagcatggtgtacgcc
gaagtggccgccaaaatggaggcctttatgaacacggccattaatgtgccgacgctgcag
ctgcaggccggcaaaatgcacatgctcctcaacgccctgatgtccacgcgtcgtctgcgc
gatcaggagtctgcgttcattctgctgacccgcgccgtcgagggtctcaccgagggactc
atcaacgtccaggagcacttggagcagatgaagctttatcgcgacattcacctgcgcatc
ctcagtctgctgcacaacagctttggggcccccaacaccgagcgagcggtgactaagtgc
ttcttcgaaatccgcgaggaagcccgcttcaacgtggaggccgcccgtgccctgatcact
gcgcactttgtcaacctcaatcagttcgatggcatgctgcgcgactgcatggacaatggc
aacaattacatggccatctcgtttggaattggtctgatcgagcgcctcattgtggaggat
cgggccattaacattgtgtccgacaacgagttcatggccaccgtcgagctgctcggccgt
ctcacccaacatcgccatcggtatcccgagtgcattgtcaatgccatcgatacactgtgg
tccggcaacttcaactccaccgctgactacagtccgttcaatgccaacgagcgttctctg
gccggtgcctcccagtacatacactccggcatgcttcacgttaggtcatgcgacacagac
gatccgccaggcttgcaggagaagaccgagttcttgctcaaggactgggtggccctctac
gcacagcagacccaacagacgacgcgcgatgcccgaaactttggggcctttgtccagaag
atgaacacctatgggatactaaagacagacgatttgatcacacgcttcttccggcaggcg
acgaacatctgcacggatgtggtgtaccgcatgtttgcggatccgagcatgcccattaac
caggcgaagaacaagatattccagtggatcgatgcgtttgtgcatctgattgcgatgctc
gtgcgacactctggcgaaccgggtaaccccacaaccaagatcaacctgctgaacaaggtg
ctgggcattgtgctgggcacacttctcaaggatcacgagatgcgtggcgttagcttccag
caggtgggctaccaccggttcttcatgatgctcttcatggagctgtgctcggccgatgtc
aacctggactcgctgatgcacagcattgtgtcggcgtttgcctacacataccaccagctc
aaacccagtgtggcgcccggcttctgctttgcctggctggagctcatttcacaccgcgtc
ttcctcggccggatactcgttcagatacccggccagaagggctggccgctgtacgcccag
ctgctgcaggaccttttcaaatatctggcccccttcttgcgcaacacggagctgggcaag
cccgtgcagctcctctacaagggcaccttgcgcgtcctgctggtgctgctgcacgacttt
ccagagttcctgtgcgactatcatttcgggttctgcgacaccataccgcccaactgtgtt
cagatgcgcaacatcatcctgtcagcattcccgcgcaacatgcgcctgcccgaccccttc
acgcccaacctcaaggtggacatgctctcggacagcagcaatgcccccaaggtgctcagc
agctacatcgtgaacataaagccgccgaacttcaagaaggacctcgactcttacctcaag
gcacgcgccccagtcaccttcctctcggaactgcgcggccatttgcaggtgaccagtgag
ccgggcacccgctacaacatgacactgatgaatgccctggtcatgtatgtgggcacacag
gcaattgctctcatcaggaacaaaaactttgtgcccaacacttccaatattgcacacagc
gcgcacatggatatcttccagaatctggccgttgacttggacaccgagggtcgctatctg
ttcctcaatgcgattgccaatcagttgcggtatcccaacagccacacgcactactttagc
tgtgccgtcttgcacttgtttgccgaggcaaactcggaggcgatccaggagcaaatcacg
cgtgttctactcgagcgtttgattgtgaaccggccgcatccgtggggtctgctcatcacc
ttcattgagctgatcaagaaccccatctacaagttctgggatcacgattttgtgcactgt
gctccggagataaccaagctcttcgaatctgtggctcgctcctgcctggccaagtcgaac
gtcacccagcagctgaacatggccatcatcgatggagagagccaggaggtgggcaacatt
aactga
DBGET
integrated database retrieval system
