Dryobates pubescens (Downy woodpecker): 104303144
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Entry
104303144 CDS
T08526
Symbol
PAPD5
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Pathway
dpub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104303144 (PAPD5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpub03019
]
104303144 (PAPD5)
03016 Transfer RNA biogenesis [BR:
dpub03016
]
104303144 (PAPD5)
Enzymes [BR:
dpub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
104303144 (PAPD5)
Messenger RNA biogenesis [BR:
dpub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104303144 (PAPD5)
Transfer RNA biogenesis [BR:
dpub03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104303144 (PAPD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP_NTPase
DUF4283
Motif
Other DBs
NCBI-GeneID:
104303144
NCBI-ProteinID:
XP_009902041
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MSPRPEEERMRMEVVNRIENVIKELWPNADVQIFGSFKTGLYLPTSDIDLVVFGKWETLP
LWTLEEALRKHNVADENSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVKAAQLIKDF
IKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACVPNANYG
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKSMLDGYRPSMLYIEDPLQPGNDV
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTQEVATYRDWISK
QWGMQSRTESSCNGNGVTLIVDTQQLDKCNNNLAEENEALGKPRNKTSETLSKHSSNSSS
GPLSSSSSTLSSSSDVDSDGTPCKTSKQLSCRQATANRMGSQEVSLESSQSSGKTQNSQT
VNTSSNMNKSQHGSARLFRSSNKGFQGPTNSSHGTSVTNKQHQGSKSHQFYHGKKRKHKR
DATLSDLCR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccagacctgaagaggagagaatgcggatggaagtggtgaacaggatagaaaac
gttataaaagagctctggcctaatgcagatgtgcagatctttggaagttttaaaactggt
ttatatttacctacaagtgatattgatttagttgtgtttggaaaatgggagacgttaccc
ctttggaccctggaagaagctcttagaaagcacaatgtagcagatgaaaactcagtaaag
gttttagacaaagcaactgtacctattattaaactgacagattccttcactgaagtaaaa
gttgatataagctttaatgtacagaatggggttaaagcagcccagctcatcaaagatttt
atcaagaaataccctgtattaccctatctagttttagtattgaaacagttcctgttgcag
agggaccttaatgaagtatttacaggtggaatcggttcttatagtctttttttaatggct
gtcagtttccttcagctgcatcccagggaagatgcctgtgtgcccaatgccaactatggt
gttcttttaatagagttttttgaattatatggacgtcacttcaattatctgaagactgga
atccgaataaaggatggtggctcttacgttgccaaggatgaagtgcaaaaaagcatgctg
gatggctacagaccatcaatgctgtacattgaagatcctttacagccaggtaatgatgtt
gggaggagttcctatggtgccatgcaagtgaaacaggcttttgattatgcctatgttgtt
ttgagccatgcagtttccccaatagctaaatattatcctaacaacgaaacagaaagtata
ctaggtagaatcattagagtaacccaagaagtggccacgtacagagactggatatcaaag
cagtggggaatgcagagtaggacggagtcttcatgtaatggtaatggagtaaccttgata
gtagatactcagcagcttgacaaatgcaacaataatcttgctgaagagaatgaagcactg
ggaaaacctagaaataaaacttcagaaacacttagtaaacattcttcaaattcttcatca
ggtcctttatcatcatcatcgtctacactgtccagctctagtgatgtagattctgatgga
acaccttgcaaaacctctaagcaattgagttgtcgtcaggctaccgcgaacagaatgggg
tcacaagaagtgtcattggaatcctctcagtcaagtgggaaaacacaaaatagccaaaca
gtcaatacatccagcaacatgaacaaatctcagcatggatctgcacggttatttcgctct
tctaataaaggcttccaaggtccaacaaactcaagccacggtacctcagttacaaacaaa
caacatcaaggcagcaaatcgcaccagttttatcacggcaaaaagaggaaacacaagagg
gatgccaccctttcagacctttgtagatag
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