Dryobates pubescens (Downy woodpecker): 104309182
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Entry
104309182 CDS
T08526
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
dpub
Dryobates pubescens (Downy woodpecker)
Brite
KEGG Orthology (KO) [BR:
dpub00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dpub04040
]
104309182 (SCN2A)
Ion channels [BR:
dpub04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104309182 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQCJ-SCHIP1
IQ
ATP-synt_B
FraC
Neur_chan_memb
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
104309182
NCBI-ProteinID:
XP_009908771
LinkDB
All DBs
Position
Unknown
AA seq
2017 aa
AA seq
DB search
MAQSVLVPPGPDSFRYFTRESLAAIEQRINEEKAQKSKQERKDDDDEDGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFETTVISYFNSSV
GENGTFINTTMTTFNWDEYIEDRSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAAAADSRDYSGVGGI
GGFSESSSEASKLSSKSAKERRNRRKKKKQNEKPEGEEKDGEEFHKSESEDSIKRKGFRF
SIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHS
TFEDNESRRDSLFVPHRHGERRNSNISQASRSSRTIPPLPANGKMHSTVDCNGVVSLVGG
PPALSPTGQLLPEVMIDKAATASNGTTTETDLRKRRSSSYHVPMDYLTDPSARQRAMSIA
SMLTNTMEELEESRQKCPPCWYKFANTCLIWDCCTPWLKVKHIVNLIVMDPFVDLAITIC
IVLNTLFMAMEHYPMTEQFSGVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDG
FIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVL
AIIVFIFAVVGMQLFGKSYKECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEWIETMW
DCMEVAGQTMCLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVA
RIQKGIDYVKRKVREFIQKAFVRKQKVLDEIKPLEDLNNKKDSCISNHTIVEIGKNLTYL
KEGNGTTSGIGSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDL
EESKEKLNASSSSEGSTVDIGLPQEGEQPEAEPEESLEPEACFTEGCVRRFKCCQVSVED
GKGKIWWNLRKTCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKV
FTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTL
RALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVN
TTTDERFDISQINNYSQCEELIKNNETARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIM
YAAVDSRNVLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDI
FMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQAFDISIMILICLNMVTM
MVETDDQSEDMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVG
MFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLF
LVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGE
PDCDPHKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAE
PLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVS
GDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVS
AVIIQRAYRRHLLRQKVKKVSCIFNQDKGKDEDDLPMKEDIIMDKLNENSTPEKTDMTPS
TTSPPSYDSVTKPDKDKYEKDKSEKEDKGKDSREGKK
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccaccaggacctgacagcttccggtatttcacaagagaa
tcacttgcagctattgagcagcgtatcaatgaagaaaaagctcaaaaatccaaacaagaa
cgcaaagatgatgatgatgaagatggcccaaagccaaacagtgacttggaggcaggaaag
acactgccatttatttacggtgacatacctccaggaatggtgtccgagcctttggaagac
ctggatccatactacatcaataagaaaacctttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccctgtacatgttaactcctttcaatcctcttagaaaa
atagctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccagactggacaaagaatgtagaatac
acgttcactggaatttatacctttgaatcccttattaaaattcttgcaaggggcttctgt
ttagaagattttacgtttcttcgagacccatggaattggctggatttcactgtcattaca
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcttgaagacaattgtgggagcc
ctaattcagtctgtgaagaagctctcggacgtaatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggcaacttgaggaataaatgcctgcag
tggcctccagacaattctacttttgaaacaactgttatctcctactttaatagctctgta
ggtgaaaatggtacatttattaatacaacaatgacaacatttaactgggacgagtacatc
gaagacagaagtcatttctacttcttggaaggacaaaatgatgctctgttgtgtggcaat
agctcagatgcaggtcaatgtccagaaggatatatatgtgtgaaagctggtagaaacccc
aactatggctacacaagttttgatacattcagttgggcattcttgtcactgtttcgattg
atgactcaggacttttgggagaatctttaccagctgacactgcgtgctgctgggaagaca
tacatgatattttttgttttggtcattttcctgggttctttctacctgattaacttgatc
ctggctgtggttgccatggcctatgaagaacagaatcaagcaaccatggaagaagcagaa
cagaaggaagcagaatttcagcaaatgctggaacaactgaaaaagcaacaggaagaagct
caggcagcagcagcagctgcagcagctgactcaagagattatagtggagtaggtggaata
ggtggattctccgaaagttcttctgaggcatcaaaactaagctcaaagagtgctaaagag
aggaggaatagaagaaagaaaaaaaagcaaaatgaaaaacctgaaggcgaggagaaggat
ggggaagaatttcacaaatctgaatcagaggacagcatcaaaaggaaaggtttccgattt
tccattgaggggaacagactgacatacgaaaagagattttcttccccacaccagtctttg
ctgagcattcgaggctccctgttttccccaaggcgcaatagcagaacaagccttttcagc
ttcagaggtcgagcaaaggatgtaggatcagaaaatgactttgctgatgatgagcacagc
acttttgaagacaatgagagcagaagagattctctctttgttcctcatagacatggtgaa
cggcgcaacagtaacattagtcaggccagtaggtcttccaggacaatacctccacttcca
gcaaatgggaagatgcacagcactgtggattgcaatggagtagtttctttagtcggtggg
ccaccagctttgtcacctactggacagcttctgccagaggtgatgattgataaagcagcc
actgctagcaatggcactactacagaaactgacttaaggaagagacggtctagttcttac
catgttcctatggactacctgacagatcccagtgcacggcaaagagcaatgagcatagcc
agcatgcttacaaacacaatggaagaactggaagaatccagacagaagtgcccaccatgc
tggtataaatttgctaacacttgcttgatttgggactgctgtactccctggctgaaagta
aaacatattgtaaatttaatagtgatggacccgtttgttgacctggccattactatctgc
attgtcctaaacaccttgttcatggccatggagcactatccaatgacagaacaattcagt
ggtgtactttcagtaggaaaccttgtatttactggaattttcacagcagaaatgtttctc
aagataatagccatggatccttactattattttcaagaaggctggaatatttttgatggt
tttattgtgagccttagtttaatggaacttggccttgcaaatgtagaagggctatctgtt
cttcgatcgttccgattgcttcgagttttcaaattggcaaaatcttggccaactctaaat
atgctaattaagattattggcaactcagtgggagctttgggaaatctgaccctggtactg
gccatcattgtgttcattttcgctgtggttgggatgcagctgttcgggaaaagctacaag
gaatgtgtctgcaagatctccagtgactgtgaacttccacgctggcacatgcatgacttt
ttccattccttcttgattgtgtttcgagtgctgtgtggagaatggatagaaacaatgtgg
gactgcatggaggttgcaggccaaaccatgtgccttacagtcttcatgatggtcatggtg
attggaaacctagtggtacttaacctctttttggccttgctgctgagctcatttagttca
gacaaccttgctgctaccgatgatgataatgaaatgaacaatctccagattgctgtggca
aggattcagaagggaatagattatgtgaagaggaaagtgcgtgaattcatccaaaaagct
tttgttagaaagcagaaggttttagatgaaatcaaacctcttgaagacctaaacaacaaa
aaagacagctgtatttccaaccacacaatagtagaaataggtaaaaaccttacctatctt
aaggaagggaatggaactaccagtggcataggcagcagcgtggaaaaatatgttgttgat
gaaagtgattacatgtcattcataaacaacccaagcctcactgtaacagtgccaattgct
gtcggggaatcagattttgaaaatttaaatacagaggagttcagcagtgagtcagacctg
gaagaaagcaaggagaaattgaatgcatccagttcatcagaaggcagtacagttgatatt
ggactacctcaagaaggggaacagccagaagcagaacctgaagagtctcttgagccagag
gcttgttttacagaaggctgtgtacgaagattcaaatgctgtcaagtcagtgtagaagat
gggaaagggaaaatctggtggaatcttaggaaaacctgctataagattgttgaacacaac
tggtttgagaccttcattgtcttcatgattcttctcagcagcggtgctctggcatttgaa
gatatatacatagagcaacgtaaaactatcaagaccatgctggaatatgctgacaaagta
tttacgtatatcttcattctggaaatgcttttaaaatgggtggcttatggctttcaaact
tatttcactaatgcgtggtgctggctggacttcctgattgttgatgtctctttggttagc
ttaacagctaatgccttgggctactcagaacttggtgcgattaaatcccttaggacacta
agagctttgagacctctgagagccttgtcgcgatttgaagggatgagggtagttgtgaat
gccctcttgggagcgattccatccattatgaatgtgcttctggtttgccttatattctgg
ctgatcttcagtatcatgggagtaaatctgtttgctggaaaattttactactgtgttaac
actacaactgatgagaggttcgatattagccaaatcaacaactacagtcagtgtgaggag
cttataaaaaacaatgaaactgcccgatggaagaatgtgaaggttaactttgataatgta
ggccttggttatctttctctgcttcaagtagctacatttaaaggatggatggatatcatg
tatgcagctgtggattctcgtaatgttttggatcagcctaagtatgaagataacctgtac
atgtatctttactttgtcatctttatcatttttggatcattctttaccttaaaccttttc
attggtgtcatcatagacaatttcaaccagcagaaaaaaaagttcggaggtcaagacatc
tttatgacagaagaacagaagaaatactacaatgcaatgaaaaaactgggatcaaagaaa
ccacaaaagcctatacctcgaccagcaaacaaattccaaggcatggtctttgattttgta
acaaaacaagcatttgatatcagtatcatgatacttatctgccttaatatggtcacaatg
atggtagaaacagatgatcagagtgaagacatggaaaacattctatattggattaacctt
gtgtttattgtacttttcactggagaatgtgtcctgaaattgatttcgcttcgccattac
tactttactataggctggaacatttttgattttgtggttgtgattctctccatagtaggt
atgttcttagctgagatgattgagaaatactttgtgtcccccacactattcagagtcatc
cgacttgccagaataggtcgaatcctgcgcctcattaaaggcgctaagggcatccgcact
ctgctttttgccttgatgatgtctcttcctgctttgttcaacattgggctgctgctgttc
ctggtcatgtttatctatgcgatttttggcatgtccaactttgcctatgttaagagggaa
gttgggattgatgacatgttcaactttgaaacttttggcaacagcatgatctgcctgttc
caaatcaccacatctgctggctgggatggtttgctagccccaattcttaacagtggggag
ccagactgcgacccccataaagatcatccggggagctccgtgaagggcgactgcggcaac
ccttctgttgggattttcttctttgtcagctacattatcatatcatttctggtagtggtg
aacatgtacattgctgtgattttggagaacttcagtgttgctactgaagaaagtgctgag
cccttgagtgaggatgactttgagatgttctatgaagtctgggagaagtttgatcccgat
gcaacacaattcatagagttcagtaagttgtcagactttgcagcttctttagatcctcct
ctccttatagcaaaaccaaataaagtccagcttattgcaatggatctgcccatggtaagc
ggtgacagaattcactgccttgacatcttgtttgctttcacaaagcgtgttctgggggaa
agtggggagatggatgccctcagaatacagatggaagatcggttcatggcagccaatcct
tccaaagtctcctatgaaccaattacaaccacattgaaacgaaaacaggaggaggtatct
gctgtcattattcagcgtgcttacagacgtcaccttttaaggcaaaaagttaaaaaagtc
tcatgtatatttaatcaggataaaggtaaagatgaggatgatctgcccatgaaagaagat
ataattatggataaattaaatgagaactctactccagaaaaaacagatatgaccccatcc
acaacctccccaccttcttatgacagtgtaacaaagccagacaaggataaatatgaaaaa
gacaaatccgaaaaagaagataaaggtaaagacagcagggaaggtaaaaagtaa
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integrated database retrieval system
