Daphnia pulex (common water flea): DAPPUDRAFT_301632
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Entry
DAPPUDRAFT_301632 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03022
Basal transcription factors
dpx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DAPPUDRAFT_301632
09124 Replication and repair
03420 Nucleotide excision repair
DAPPUDRAFT_301632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpx03021
]
DAPPUDRAFT_301632
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_301632
Transcription machinery [BR:
dpx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DAPPUDRAFT_301632
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DAPPUDRAFT_301632
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Mac
Motif
Other DBs
NCBI-ProteinID:
EFX83821
JGI:
Dappu1_301632
UniProt:
E9G9U7
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MTSSSSESILLLVSHVKLKKNEGELYLMSERLGWMVGNKDSFNVTHKYCDIKTQKISPEG
KPKVQLQVCLHDGNATTFQFVNPAGQAEQMADRDKVKDLLQLTLPKFKRMINKDLEEKKL
FLSENPQYRQLYMDLVKSNVISAEEFWADHATQFIKQQQDAKNAGQQDVGISASFLADIK
PQITDGCNGGVRYLLTSDVMASIFRTYPSVKQKHLKCVPNKMTEEEFWKKFFSSHYLHRD
KNINDTKDLFTDCGKQDEQILRQDLSTAIKDPLLDLTTLNDVVEEESSSTPSNSKINNIA
HQNMIRRFNQHSILVLKASEQAPGEQALESSVPEPAPSKRIRLQEAMSYEDLESNDTDPT
VQLNLSRIERYLNGPPTTVQSQTGVNGNGSTAAHFDIDANAFKSILGRWMRGGGERYNPL
DVLNSATAVNVLGELSIGGTLMRGSQPNSAIHLTSELQKELKELYVSLSEILKHFWAAFP
PSSPELVQKTNRMIDALHKFNQAKLAPYEQKLIQASTSSEAENILKPLRFQLQAAIRKHS
QLSERRPLPRAAVSSM
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctcatcatcagaaagcatacttttattagtttctcacgttaaacttaagaaa
aatgagggagaactatatttgatgtccgaacgattggggtggatggttggtaataaagac
agtttcaatgtaacgcataaatattgtgatataaaaactcaaaagatttcccctgaagga
aagcctaaagtgcagttgcaagtctgcttacatgatggaaatgccacaacttttcagttt
gttaatccagcagggcaagctgaacagatggctgaccgagacaaagtgaaagatctgctt
caactaaccctgcctaaatttaagaggatgattaacaaagatcttgaagaaaagaaactt
tttctgtctgaaaatccccaatatcggcagctatacatggatcttgtaaaatcaaatgtc
atatcagctgaagaattttgggctgaccatgcaactcagtttatcaaacaacaacaagat
gctaaaaatgctggtcaacaggatgtcggcatctcagcttcattcttggctgatatcaaa
cctcagattacagatggctgtaatggtggtgtcagatatcttctaacatctgatgtgatg
gccagcatattcagaacatacccatccgttaaacaaaaacatcttaaatgtgtgccaaac
aaaatgactgaagaagaattttggaaaaaatttttctcttcccactatctgcatcgtgat
aaaaacattaatgatactaaagatttgtttacggattgcggcaagcaggatgagcaaatc
ctaagacaagatttatcaactgccatcaaagacccactccttgatctaactacccttaat
gatgttgttgaagaagaatcctcttcaactccatcaaactccaaaattaacaatattgcc
catcaaaacatgatccgacggtttaatcagcattccattttagtattaaaagcatcggaa
caagcacctggggaacaagcactggagtcttctgttcccgaacccgctccgtcaaagagg
attcggctacaagaagcgatgtcgtatgaggatttggaatctaatgacacagaccctacc
gttcaattgaatctttcacgtattgagagatacttaaatggtcctcctacgacagtgcaa
tcacaaacaggggttaacggaaatggatcaactgctgctcattttgatattgatgccaac
gccttcaaatctattctaggtcgatggatgcgtggaggtggagaaagatataatccgttg
gatgtgctcaattccgcaacagcagtaaacgtcttaggtgaattgtcgatcggcggaaca
cttatgagaggctctcaaccaaattcggcgattcatttgaccagtgaactgcaaaaagag
ctgaaagaactgtacgtctcattaagtgaaattcttaagcatttttgggctgctttccct
ccgtcgtcgcctgaactcgttcaaaagaccaatcgcatgattgatgctctacacaaattt
aatcaagcaaagttggccccttacgaacagaaacttattcaggctagcacgtcaagtgag
gcagaaaatattctgaagcccctgagattccaactacaggcagccataaggaaacattcc
caattatctgaaaggcgtcctttgccaagagcagccgtatcttcaatgtga
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