Daphnia pulex (common water flea): DAPPUDRAFT_324499
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Entry
DAPPUDRAFT_324499 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAPPUDRAFT_324499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpx03019
]
DAPPUDRAFT_324499
Messenger RNA biogenesis [BR:
dpx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DAPPUDRAFT_324499
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DAPPUDRAFT_324499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-ProteinID:
EFX74246
JGI:
Dappu1_324499
UniProt:
E9H1W9
LinkDB
All DBs
Position
Unknown
AA seq
2396 aa
AA seq
DB search
MSLDSLSLALTQIQYLVNSLNKKNYLQSRNSIEELVTIYGIEAERHLLCCCLAGVDFVGL
GNGESSSSVKSNNPGKEKEREQLLADFFGHCITQPAFPSLLNSALEQPLRSNFTRSVQQQ
FKSNSAVISNFCRFLRLSRSQEVVLRIALLETFNPEARSQSILIIRQKLSELLKNFADQD
RNTAPLEGGLQESSPEVIHYILSRLINEPDTFGISKDLLEDVLSCLRRDYPRELVPVILA
PILYKEQGVDYTCHKMAHETNSLTKNMVETSLADLILETGYPFTSSLEECRANITTFGFR
ELSPPSVARAITYMARTPTGLDEHSLRHLRNGTSQSWPEQESSGDKSDEGLPTSWNMEIF
VQVVTELAPSLNWKEIVSELDHPSFLIRDRAGLRLLLTALQLGLQTQGATFPAELLYQSW
NNAEAQLSLLSQLMRNTDLFCIADYPHHAINVEILKSPPEPDNKKLASWKCLGLLETLLN
LLENGGLYSQVQELLKEPVQHCPDVLVLGLLQLTQPMTKLRQELLSSLIPVFLGNHPNSA
IILHHVWHAQSPLVKPLVMHAMAEWYMRAEHDQARLSRILDVAQDLKALSMLLNVQRFPF
VIDLSCLASRREYLKLDKWLTDKMREHGETFVAACVNFLHQRCPQISGKVKEEAGLKPTQ
LPSDTLAIMLSCLQVWTGNVSQELSDTINTMVANCNVLNRARAQPPPGVLKPIRPGSGVG
VDVSFPPGTLSSQLFPPPGVDSTGLSPSLSSMGLGPPTSSGFAVNIGSNTLGGNTPAPGS
PGKLFSSMSLLETGNEFTNPLGIGIPSSMASGSGNGQSSMGTSNIGSGTAGSPGSIVNGP
VRVGMNPHLGQERRTGDVSSAFADMPQAVSKDIEDETNSYFQRIYNQSPSTPTLTVDEVL
ELLKKFQHSTNRREREIFDCMLRNLFEEYRFFPQYPDRELHITAQLFGGIMEHGLVTYMA
LGVALRYVLEAVRKPHGTKMYYFGITALDRFRHRLKEYPQYCQHLASIPHFREFPPHLIE
YIDNGSRGVEPPNRPHGPVLPQVTTAAKTTTPTTPTTTVAGKTTSTAAPMSGRPSIANAT
NIDTLLVASEKDVLIVDPPESVQDKVSFIFNNLSQLNLTQKCEELRDIVGEEHWSWVAQY
LVMKRASIEPNFHTLYSNFLDTLKLSELSRLVIGETFRNIKVLLRSDKGIANFSDRTLLK
NLGHWLGLLMLSKNRPILQGDIDLKSILVEAYHKGQQELLYVVPFVAKVLESCAKSKVFK
PPNPWTLGIMNVLAELHQEPDLKLNLKFEVEVLCKTLAIDIHDLKPGVVFKDHNRLSRLE
PQLSQPQLQQMYQPAPQTAAATTTTAAAAATTTATTCWLTCPPDPRFSYLDINVTSLAGL
AQHLVVNNNIPLLTAHPNLRILIRPAVERAVQECIHPVVDWSMKIALTTCEQIIKKDFSL
DADDTRMRAAAHHMVRSLSAGTALIRCRDHLLLTIANNLKTAFSAALQRSTSPQQKELVE
QAATLTAQDNVEPACAFIQKTAVEKSISEIDKRLATEFDLRKHARNEGRRYYDPAVFAYQ
ADRMPEPIRLKMSGVTPQQAAVYEEFARYIPGFLPVTERDAAMLVPKMIPTFTNDEIGVI
LEKVAMELERFLQSLLPLGSSTQAVAIGSLLEAVILARSSREHGAHITLLQKAFEGLVES
LTSFATTGNDPEAVVRFRDAHLLVLKALQDPQAYGPQWTNRQVTRCWAECREEFRYNLDI
LDCLVRAHLINLQQFDMQLASVLEQALNAGIGSSILALGFAMQLVHVYLLEGPASGAPVV
ITENDLANTIEILTRIAAHARQPPDGLATILELLRAGHETGLMDRATGGPGGPTALIHSG
IAQARDYDDPHGLPEKTEYLLQEWVAMYHLPNAGRDSSKAFGHFVTQMSLHGVLKTDDLI
TRFFRLCTQFCVDISYRALASEPTADLIRSKAFHTLDAYVRLIALLIKHSGDANNGVTKV
NLLNKVLGIVAGVLLQDQEVRGAEFQQLAYHRILIMLFLELNAPEQVLDSINFQVLTAFC
HTLHILRPAKAPGFAYAWLEIVSHRVFIGRLLSITPQQKGWGMYAQLLIDLFKFLAPFLR
NAELSKPVSMLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPRNM
RLPDPFTPNLKVDMLPEISHAPRVLTHFAAMIQPPTLKKDLDSYLKTRGPVTFLSELRSV
VQVSPEPGMHYNLPLLNALVLYVGTQAIQSIQTKGLSPSMATIGHSSYMDIFQSLAVNLD
TEGRYLFINAIANQLRYPNSHTHYFSCVLLCLFAEANSEAIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPVFKFWNHEFVHCAPEIEKLFESVARSCMVVQKQTPRDAENHD
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgagcctagactcactgtcactggcgctgacacagatccaatacctggtcaacagcctc
aacaaaaagaactatcttcaatctagaaatagtattgaagaattagttaccatttatggt
attgaagctgaaagacatcttctttgttgctgtcttgctggagttgactttgtggggtta
ggaaacggtgaaagttcatcatctgtcaagtcaaataacccaggcaaggagaaggaaaga
gagcagcttctggctgatttttttggacattgcatcacccagccagcattccctagtctt
ttgaatagtgcccttgaacagccattgagaagcaactttactagaagtgttcaacaacaa
ttcaaaagcaattcggcagttatcagcaatttctgtcggtttttgcgactgtcacgcagc
caagaggtcgttcttaggattgctcttttagaaacattcaaccctgaagcgcgttcacag
tctatactaattattcgccagaaacttagtgaattattgaaaaattttgctgatcaagat
aggaatactgccccgttggaaggaggactacaggaatcgtctcctgaagtcattcactac
attcttagtcgattgatcaacgagccggatacatttggaataagcaaagaccttttagag
gacgtattgagctgcttgcgccgtgactatcctcgtgaattggtccctgtgattttagcc
ccaatcctttacaaggagcaaggggtagactacacttgtcataagatggcacacgaaact
aacagtttgaccaagaatatggtcgaaacatcattggccgatttgatccttgaaactgga
tacccattcacatcaagtctcgaagaatgccgtgcaaatatcacgaccttcggttttcgc
gaattgtctcccccatcggtagctcgtgcaataacctacatggctcgcacgcccaccgga
ttggacgaacattcattaagacacttgagaaatggtacatcacaatcatggcctgagcaa
gaaagctcaggagataaaagcgacgaaggccttcctacctcatggaacatggaaatattt
gttcaggttgttacggagctggcgccaagtttaaactggaaagaaattgtttcagaattg
gaccaccctagtttcctcataagagatagagcaggattgcgccttctcctgacggcccta
caattgggcctgcaaacacagggcgcaactttcccagccgagttgctgtatcaatcatgg
aacaacgctgaagctcagctatcgctgctttcgcaattaatgaggaatacggatctcttt
tgcattgccgactatccacaccacgccattaatgtcgaaattctgaaatcaccccctgaa
cctgacaacaagaagcttgccagttggaaatgcctgggattgcttgaaactcttctcaac
ttattggaaaacggcgggctttacagccaggtgcaagaattgcttaaggagcctgttcaa
cactgtcctgatgttttagtccttgggcttcttcagctgacacaaccaatgactaaactc
agacaagaattgctcagcagtcttattcctgtttttttgggcaatcatccaaactctgcc
atcattctacaccatgtctggcatgcacagtcacctctggtcaaacctctggttatgcac
gctatggctgagtggtacatgagagctgaacacgatcaagcgcggttatcaagaattctc
gatgtagcccaagacctaaaggctctatctatgctactaaatgtgcagcgcttccctttt
gtcatcgatctctcgtgtctagcatcgcgccgtgaatatctcaaactcgacaaatggctg
acagacaaaatgcgtgaacatggggaaaccttcgttgcagcatgcgttaactttctacat
cagagatgtcctcaaatctccgggaaagttaaagaagaagctggtctaaagcccactcaa
cttccctcggacacactagcaatcatgttatcttgcctgcaggtttggactggaaatgtg
tctcaagaactatctgatactataaatacaatggttgcgaattgcaacgtcctgaatcgt
gcccgagcgcaacccccacctggcgtcttgaaacctatccgtcctggcagtggagttgga
gttgacgtttcatttccaccaggaaccttaagcagccaactatttccgcctcctggagtt
gactcaactggtctttcgcccagcctaagtagcatgggcctaggtccaccaacttcatct
ggatttgctgttaatattgggtccaatacactcggaggaaatactccagcccccggatca
ccgggaaaattgttctctagcatgtctttgctagaaactggtaatgaatttacaaatcca
ctgggcataggtattccatcttctatggcgagtggaagcgggaacggtcaatcaagtatg
ggtacgagcaatattggatctggtacggctggttctcctggatcgattgtcaatggcccg
gttcgagtaggaatgaatcctcacctaggccaagaacgaagaaccggcgatgtatctagt
gcttttgctgacatgccacaagctgtttcaaaagatatcgaagacgagacaaatagttat
ttccagcggatttacaaccaatcgccttcaacgcctaccttgacagtcgatgaagttctt
gaacttttgaagaagtttcaacattcgactaaccgtcgtgaacgggagatatttgactgc
atgttgaggaatctattcgaagagtatcgtttcttccctcagtatccagatcgcgagctg
cacataacggctcaattgtttggtggaatcatggagcatggtctcgtcacctatatggct
ctgggagtggcactacgttatgtacttgaagctgtccggaaaccacacgggacgaagatg
tactattttgggatcactgccttagatcggttcagacatagattgaaggaatatccgcaa
tattgtcaacatttggctagcattccgcattttcgggagtttccgccgcatctaatcgag
tatatcgataatggttcccgtggcgtcgagccacccaatcgtcctcatggtccagtatta
cctcaagtgacgacagctgccaaaaccactactccgacaacgccaactacaacagttgct
ggtaaaacgacctctactgctgcacctatgagtggtcgaccgtcaatagcaaacgcgacc
aacatagacacattgctggttgcttcggagaaagacgtcttaattgtagacccaccagag
agcgtccaagacaaagtcagcttcatatttaataatctgagtcaattaaacctgacgcaa
aagtgcgaagaattgcgtgacattgtgggtgaagaacattggtcttgggtagcccagtat
ctggtgatgaaaagagcttcaattgaaccaaattttcacacactctattcaaacttcctt
gacacactgaagctatccgagctcagtcgacttgtcattggtgagacgttccgcaatatc
aaggtactccttcgtagtgacaagggaatagcaaatttctcagatcgcacactgttgaaa
aatcttggtcattggcttggacttttgatgctatctaaaaaccggccgattctacaggga
gatattgatttaaaatcaattctagtcgaagcgtatcataaagggcaacaagaacttctg
tacgtcgtaccattcgtggcgaaagtcttagagtcatgtgctaagagcaaagtgttcaaa
ccacccaatccatggaccctaggaatcatgaatgttttggcagaactacatcaggagcct
gacttgaaacttaatcttaaatttgaagtcgaagttctttgtaaaactctagccattgat
attcacgatcttaagccgggagtagtcttcaaggatcacaatcgtctgtcacgtttggaa
ccgcagttgtcccagccgcaattacagcaaatgtatcaaccagcaccacaaacagcagca
gcaacaacaacaacagcagcagcagcagccaccaccaccgccacaacttgctggctcacc
tgccctcctgatccgaggttttcttatttggacatcaatgtcacttcgttggccggacta
gctcagcatctagtagttaataataacataccgctgttgacggcgcatccgaatttaagg
atccttatccgaccagctgttgaacgagctgttcaagagtgtattcatccagttgttgat
tggtctatgaaaatagccttgaccacttgcgagcaaatcataaagaaagacttttcactc
gacgcggatgacacccgcatgcgcgctgctgctcatcacatggttcgcagtctcagtgca
ggcacggcattgattcgctgtcgagatcatttgctattgacgattgcgaacaatctcaag
acagcattttctgctgccttgcagagaagcaccagccctcaacagaaggagttggttgaa
caagcagccactttgaccgctcaagataacgttgaaccagcgtgtgcgtttatccaaaag
acagccgtagagaaatccatttcggaaatcgataaacgccttgccacggagttcgattta
cgcaagcacgctcgaaacgaaggcaggagatactacgaccccgctgttttcgcctatcag
gccgatcgaatgccggaacccattcgtttgaaaatgagtggcgttacaccccaacaagct
gccgtatatgaggagtttgcccgatacatacctggattcttacctgtcaccgaacgagat
gcagccatgcttgtgcctaagatgatccccacgtttaccaacgatgaaattggggtcatt
ttggaaaaagttgccatggaattggagcgtttcttgcaatcactgttgccattgggcagc
tcaacgcaagcagttgcgattggttctctattggaagctgtcattttggctcgttcttca
cgtgaacacggagcacatattactttacttcaaaaagctttcgaaggactggtggagagc
ctgaccagtttcgctacgaccggaaatgatccggaagccgtcgtccgtttccgcgacgca
catttgctggttttgaaagccttgcaagatccccaggcttatggacctcaatggactaat
cgtcaggtgacgcgatgctgggccgaatgtcgagaagagtttcgatacaatctcgatatt
cttgactgccttgtgcgagctcatctcataaacttgcagcaatttgacatgcaactagct
tctgtgttagagcaagcccttaatgctggcattggatcttctatattagcacttggcttt
gctatgcaattggtgcatgtctatcttctcgagggacccgcatctggcgctcccgtggtc
atcactgaaaacgacttggcgaacacaattgaaattttgacacgtatcgctgctcacgct
aggcaacccccagatggtctagcaactattttggaattgctacgagctggccatgagacc
ggtctaatggatcgtgccactggcggtccaggcggaccaacggctttgattcattctgga
atcgctcaggcacgcgattatgacgatccccatggattgcccgaaaagaccgaatacctt
ctgcaggagtgggtagctatgtatcatctacctaacgctggacgggattcgtctaaagct
ttcggtcacttcgtcacccaaatgagtctacatggagtgttgaaaaccgatgatttgatc
acacgctttttccggctgtgcactcaattttgcgttgatatctcatatcgagcattggct
tccgaaccgactgccgacctgatccgcagtaaagcgtttcacactctggatgcttatgtc
cgattaattgctttactcattaagcattctggtgacgcaaacaacggcgttacaaaagta
aatctcctcaacaaagttttaggtatcgttgcaggagttctgctacaagatcaagaagtt
cgcggtgcggaatttcagcaattggcttatcatcgtatcctcataatgttgtttcttgag
ttaaatgcgcccgaacaagtacttgattccatcaatttccaagttttgacggctttctgt
catacactgcacattctgagaccagcgaaggccccaggctttgcgtatgcctggctagaa
attgtttcgcatagggttttcatcgggcggttgctgtcgattactccccaacagaaagga
tgggggatgtatgctcaactgttgatcgacttattcaagtttttggccccatttctacgg
aacgccgaactgagcaagcccgtctcaatgttgtacaaaggaacactgcgcgttctgctg
gttttgttgcatgactttcccgaattcctttgcgactatcattatggattctgtgatgtg
attcctcccaattgcattcaaatgagaaatttgattttgtcggcgttcccacgcaatatg
cgtctgcctgatccattcacgcccaatctcaaagtggacatgttaccggaaatcagtcac
gctccacgtgtactgactcatttcgcagcaatgatccaaccgcctacgctcaaaaaggat
ttggactcgtacctgaaaacgcgcggaccagttacgtttctttcggagttacgaagtgta
gttcaggtttcacctgaacctggaatgcactataatttgcccttgctgaacgcattggtc
ttgtacgttggcacccaggccatacaatcgatacagaccaaaggattatctccgtcaatg
gcgacaattggccactcttcttacatggatatcttccagagtttagccgtcaaccttgac
acggaagggcgttacttgttcatcaacgccattgctaatcaattgcgctatcctaatagc
cacacgcactacttcagctgcgttctgctttgccttttcgcagaagcaaattctgaggcg
attcaagaacaaatcactagggtcctgctggagaggctcattgtcaatcgaccgcaccca
tggggattactcattacattcattgaattgataaagaaccctgttttcaaattttggaat
cacgaattcgtccactgcgccccggaaatcgaaaaactatttgaatctgtggctcgatca
tgcatggtggtccaaaaacaaactcctcgggatgcagaaaaccacgattga
DBGET
integrated database retrieval system
