KEGG   PATHWAY: dre04146
Entry
dre04146                    Pathway                                
Name
Peroxisome - Danio rerio (zebrafish)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
dre04146  Peroxisome
dre04146

Other DBs
GO: 0005777
Organism
Danio rerio (zebrafish) [GN:dre]
Gene
100000859  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
100003383  pmvK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
100004228  slc27a2b; very long-chain acyl-CoA synthetase precursor [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100006589  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100009650  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100034578  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
100037349  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
100093708  slc25a17; peroxisomal membrane protein PMP34 [KO:K13354]
100170781  abcd3b; ATP-binding cassette sub-family D member 3b [KO:K05677] [EC:7.6.2.4]
100329471  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
100332270  pex5lb; PEX5-related protein isoform X2 [KO:K13342]
100332846  acsl2; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
101882118  abcd2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
30068  cat; catalase [KO:K03781] [EC:1.11.1.6]
30553  sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
324778  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
334561  acsl4b; long-chain-fatty-acid--CoA ligase 4b [KO:K01897] [EC:6.2.1.3]
334644  pex26; peroxisome assembly protein 26 [KO:K13340]
335799  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
336430  gnpat2; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
386801  agpS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
386951  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
393105  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
393174  pex12; peroxisome assembly protein 12 [KO:K13345]
393197  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
393455  hao2; 2-Hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
393539  dhrs4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
393618  pex13; peroxisome biogenesis factor 13 [KO:K13344]
393622  acsl4a; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
393839  scp2a; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
394131  pex5; peroxisomal biogenesis factor 5 isoform X2 [KO:K13342]
394140  mpv17; mitochondrial inner membrane protein Mpv17 [KO:K13348]
394190  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
402827  hao1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
402994  dao.3; D-amino-acid oxidase, tandem duplicate 3 isoform X1 [KO:K00273] [EC:1.4.3.3]
404036  nos2a; nitric oxide synthase 2a, inducible [KO:K13241] [EC:1.14.13.39]
405800  dao.2; D-amino-acid oxidase, tandem duplicate 2 [KO:K00273] [EC:1.4.3.3]
406358  hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
406421  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
406623  decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
406803  abcd3a; ATP-binding cassette sub-family D member 3a [KO:K05677] [EC:7.6.2.4]
406829  far1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
431754  acaa1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
436603  agxta; alanine--glyoxylate and serine--pyruvate aminotransferase A [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
436833  gstk1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
436840  mpv17l2; mpv17-like protein 2 [KO:K13348]
436918  eci2; enoyl-CoA delta isomerase 2 [KO:K13239] [EC:5.3.3.8]
445175  acsl1b; long-chain-fatty-acid--CoA ligase 1b isoform X1 [KO:K01897] [EC:6.2.1.3]
447855  cratb; carnitine O-acetyltransferase B [KO:K00624] [EC:2.3.1.7]
447860  acsl5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
447868  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
449545  crata; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
449662  acox1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
449821  pex10; peroxisome biogenesis factor 10 isoform X1 [KO:K13346]
449925  slc27a2a; solute carrier family 27 member 2a [KO:K08746] [EC:6.2.1.- 6.2.1.3]
450048  ech1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
450052  acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
492477  mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
494096  zgc:101540; hsFATP2a_ACSVL_like domain-containing protein [KO:K08746] [EC:6.2.1.- 6.2.1.3]
494099  ephx2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
541344  prdx1; peroxiredoxin-1 isoform X1 [KO:K13279] [EC:1.11.1.24]
541405  pex7; peroxisomal biogenesis factor 7 [KO:K13341]
550370  nudt12; NAD-capped RNA hydrolase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
550422  pecR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
550521  phyH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
553204  croT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
553653  amacr; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
554105  prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
555308  acsl1a; long-chain-fatty-acid--CoA ligase 1a isoform X2 [KO:K01897] [EC:6.2.1.3]
556228  pex2; peroxisome biogenesis factor 2 [KO:K06664]
556815  nudt13; NAD(P)H pyrophosphatase NUDT13, mitochondrial [KO:K03426] [EC:3.6.1.22]
557009  pex5la; PEX5-related protein isoform X2 [KO:K13342]
558601  pipox; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
559656  acsl3b; long-chain-fatty-acid--CoA ligase 3b isoform X1 [KO:K01897] [EC:6.2.1.3]
559933  pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
560486  xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
562075  zgc:154046; Carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
562105  paoX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
563178  mpv17l; mpv17-like protein [KO:K13349]
563199  [KO:K13349]
563203  pex11g; peroxisomal membrane protein 11C [KO:K13353]
563654  nos2b; nitric oxide synthase 2b, inducible [KO:K13241] [EC:1.14.13.39]
565385  ddo; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
565760  pex11a; peroxisomal membrane protein 11A [KO:K13351]
566065  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
566367  abcd1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
566378  slc25a17l; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
566742  pex11b; peroxisomal membrane protein 11B [KO:K13352]
566863  acsl6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
567157  acsl3a; long-chain-fatty-acid--CoA ligase 3a [KO:K01897] [EC:6.2.1.3]
571388  hmgcll1; 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
572335  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
573990  pex16; peroxisomal biogenesis factor 16 [KO:K13335]
619259  dao.1; D-amino-acid oxidase, tandem duplicate 1 isoform X1 [KO:K00273] [EC:1.4.3.3]
678541  gstk4; glutathione S-transferase kappa 4 [KO:K13299] [EC:2.5.1.18]
767748  abcd4; lysosomal cobalamin transporter ABCD4 [KO:K05678] [EC:7.6.2.8]
791455  prdx2; peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
792998  pex6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
79378  agxtb; alanine--glyoxylate and serine--pyruvate aminotransferase B [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
793906  pex1; peroxisomal ATPase PEX1 [KO:K13338]
794545  nudt19; acyl-coenzyme A diphosphatase NUDT19 [KO:K13355] [EC:3.6.1.77]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
dre00071  Fatty acid degradation
dre00120  Primary bile acid biosynthesis
dre00230  Purine metabolism
dre00564  Glycerophospholipid metabolism
dre00565  Ether lipid metabolism
dre00830  Retinol metabolism
dre00900  Terpenoid backbone biosynthesis
dre03320  PPAR signaling pathway
KO pathway
ko04146   

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