Danio rerio (zebrafish): 100000122
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Entry
100000122 CDS
T01004
Symbol
si:dkey-175g6.5
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dre03009
]
100000122 (si:dkey-175g6.5)
04121 Ubiquitin system [BR:
dre04121
]
100000122 (si:dkey-175g6.5)
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100000122 (si:dkey-175g6.5)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
100000122 (si:dkey-175g6.5)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100000122 (si:dkey-175g6.5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
DUF6175
zf-C3HC4_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
100000122
NCBI-ProteinID:
XP_001340400
ZFIN:
ZDB-GENE-091204-127
Ensembl:
ENSDARG00000003984
UniProt:
E7F4K2
LinkDB
All DBs
Position
10:23099875..23140115
Genome browser
AA seq
1751 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAADLLARESGVVPGFVGFGVSTSNDLGYVPAVQGAEEIDN
LVDADFRMVLRKLSKRDSVTKLKAVQEFGAMCQERQTDVVKGVLPYWPRIYCRISMDHDR
RVREATQQAFEQLVLKVKRNLAPYLKSIMGHWLISQCDTYSPAASAASAAFQAAFPLNKQ
TEAISFCKDEILNVLQDNLLKETADTLSDPKSVPGEEREAKYIRLLTSSLLALKRLLCAL
PEKDREQIKDGLSQLITQAKFWKYSKHKTPQIRGAFFELIATMCERTPQLIQAEAARACS
AVLLSIDDTDPMVLPPLWEAVLHIMSCVDNCWMHVSAKKGVLPKLWVLLKEGARGLATSL
HPNLLPFISKLPAEVKQPDLEFSRTFLTSIIEGLSSDRASSSPSESAAIIDSTMECLRFI
ILQNAGDEQEQRNIQNMLISEQLLPLIDRALKSPALQSGPLFPQLSDMLLSWEKRAAGKD
SSTFQRLLSDFWEGLSRLCTAYVDCEESERTALEGIALLLQIMQNPNSVGKQTKKKKTVK
ISFADHEERGQGDEPPRQAPVVEEQDCPLRHEHLLDLVCQLAELNMVYVSERESERHLRF
LSQLLGAFPRPEVFQVLLRPEEMKPEMGSELRPLTENAAVHFLLQRVAVWLKQEDRKDTD
FLVDMVFSSLQCCSSDSDKTLILNQISKDLNWSVTLQLIEKACSDPVRLEVCVGWLRGSV
LGERLVGLAGDLCEMGLCGSPSSSSYHAHGWPLISLALSQQHNNDPLIGKVYVEQIIDKL
HATLSEAKGMSDAGNLEPLVTFISDVAATFFSSVKSCLLLTSAEELLMTVFQLCAQDQTV
THLSDALLLKLRHAYIAGIESLIGFLGAGVTKGTLLHNIALWVKSQLLNTPMTVKSLQVL
VQAVESLAQTIASAQKTSCLFSQFICCLTPTEEEWRHIRQALPPQWLRNPLLCGRLRVTG
QNPSMDVWRCRASNRLPAHLCVSALLGRVIFTAASPDDQQVEADLSEIPDLKHIVSEIFY
GLQWCEEMEFSPLTVSEYHKLLQSWSLEQKIHNISLIKSALTDTLFTRSQENGSLWSLCL
AKYLQINKMDPGDIKGLYGSVESFFPLSEHSVNTLQVLCPFLASEDRESLIALCVAELLN
WQDQEHDCSDGVLCCLAVLLCCLQADAAVEDEILLAVVSTIAEWRNSREEWFLFNSDLEK
ASAARLLLAVEMMRFLCWLVDRSPAVLGNTYWDLLLCSMLAWLETASENSAVFWNPWVQL
FVCTNCELIVRLSEFFTSPPAGVLEQLPAELSSEWKEFFQEGIHNLLLPLLIKIPMDFPD
PDDPMFPLPVLRAVGEALTYIPVELLTQNKLPPRFVADQKSSLSEPLQTLLNSLSPLLLF
RARPLQLAVYHILNKVMPLLPESDSESASAKSEDEDGEEPCLSPPAALMSILSTTEELLE
NILGAVQVGEFAVVQPLSMEHCCILGYLLSWKLLLAFFKASSSHLRAQYSLHLKKSRSLH
KLLLHLFRLMPESPSMPGQSAAPKTFFTESLSLSPGKTENLQFEVSHLACSVYYGALKDL
PAMVRLWWNSQEKRIFSIVDKFTSKYVSGILSAQEISSVQSSTVTFENMTVKARSATREV
IATYSVEDVFIELVIQLPQNYPLGSILVDSGRRVGVAVQQWRNWMLQLSTYLTHQNGSIL
EGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNK
STCPLCRETFF
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaaaaataaacagagaacgaaaggaaatgttcggccttccagcagtggcaga
gctgctgatctgttggcccgggagagcggtgttgttcccgggtttgtgggattcggtgtc
tcgacctctaatgatttaggatatgtacctgcagtacagggggcagaggagatagacaat
ctagtggatgcagacttccgcatggttctgcggaaattgtccaaaagagattcagtcaca
aaattaaaggcagtacaagagtttggagcaatgtgtcaagagcggcagactgatgttgta
aaaggtgtcctgccatactggcctcggatatactgccggatatcgatggaccacgatcgc
cgtgtgcgagaggccacacaacaggcctttgagcagctggttttaaaagtcaagaggaat
ctggccccctacctgaagagcatcatgggtcactggctcatctctcagtgcgacacgtac
tctcctgctgcctcagccgccagcgctgcttttcaggctgcttttcccctcaataaacaa
acagaggctatcagcttctgtaaagatgaaatcctcaatgttctccaagacaatttgctg
aaagaaacagcggacacacttagtgaccctaaaagtgtgccaggagaggagcgagaagct
aagtatattcggctattgactagttctctgctggccctgaagagactgctatgtgcttta
cctgagaaagacagagaacagataaaggatggactttcccagctgatcacacaggctaaa
ttctggaagtacagcaaacacaagaccccacagattcgaggggcgttctttgagctgatt
gccaccatgtgtgagcgcacacctcagctgatccaggcagaagcggctcgagcatgttct
gctgttctgctttctattgatgacacagatccaatggtgctgccacctctgtgggaggcc
gtcctccatatcatgtcctgcgttgataactgttggatgcatgtaagtgctaagaaaggc
gtgttgccgaagctctgggtgcttcttaaagaaggggctcgaggccttgcaacatctcta
catccaaacctactcccgttcataagcaaactgccagcagaggtcaaacagccggacctg
gagttctccaggacatttcttacatccatcattgagggattgtcgagcgatcgtgcctca
tccagtccttcagaaagtgcagccattattgattccacaatggagtgtcttcgctttatc
atcttgcagaacgccggagatgagcaggaacagagaaacatccagaacatgctaatctca
gagcagctccttcctctgattgacagagctctgaaaagcccagcgctgcagtcgggccct
ctgttccctcagctctcagatatgctgctgtcctgggaaaagcgggcggcaggaaaagat
tcttccacttttcaaagactgctgtcagatttctgggaaggtctgagtcgcttgtgcaca
gcttacgtggactgtgaggagtctgaacgaaccgctcttgaaggtattgcgttgcttctg
cagattatgcagaatccaaacagtgtcggtaaacagaccaagaagaagaaaactgtcaaa
attagcttcgcagaccatgaagaaagaggccagggggatgaacctccgaggcaagctcca
gtggtggaggagcaggactgtcccttgagacatgaacacctgctggatttggtttgccag
ctggcggagctcaacatggtgtacgtgagcgagcgggagtcagaaaggcacctgaggttt
ttgtctcagctgctcggggcgtttcccaggcctgaggtgttccaggtgctgctgcggcca
gaggaaatgaagcctgaaatggggtcagagcttcggccactcactgagaacgcagctgtc
cactttctcctgcagagagtggctgtgtggttaaaacaggaggacaggaaggacacagat
ttcctggtggacatggttttcagttccctgcagtgctgcagctctgattctgacaagaca
ctcatcctcaaccaaatcagcaaggatctgaattggagtgtgacccttcagctaattgaa
aaggcgtgttcagaccctgtccgtctggaagtgtgtgtgggctggctaaggggttcagtg
ttgggagagaggctggtgggccttgctggagatctgtgtgagatgggtttgtgtgggtct
ccttcatcttcctcctatcatgcacacggctggcctctcatcagcctcgctctgtcacag
cagcacaataatgaccctcttattggcaaggtgtatgtcgagcagatcatcgacaagctt
catgccaccctgtcagaagcaaagggcatgtcagatgctggaaacctggaaccactggtc
actttcatctctgatgttgctgccactttcttttcatcggtgaagagctgtctcctgctg
acgtctgctgaggagctgctcatgactgttttccagctctgtgcacaggaccaaactgtc
actcatctctcagatgctcttctgctgaagctccggcacgcatacattgctggcattgag
tcactgatcggtttcctgggcgcaggagtcacgaagggcactctcctccataatattgct
ctctgggttaaaagtcaactgctcaatacaccaatgacagtcaaaagtctgcaggttttg
gtacaggctgttgagagtctggctcaaaccattgcctcggcacagaagaccagctgtctt
ttttctcagtttatatgctgtcttactcctactgaagaggaatggagacacattagacaa
gcactgccacctcagtggttgagaaaccctctactgtgtggtcgtctcagagtcactggc
caaaacccctccatggatgtgtggaggtgcagggcatcaaaccggctgcctgcacacctg
tgtgtaagtgctttactgggtagagttatcttcactgcagcttcacctgatgaccagcag
gtggaggcagacctctccgaaatacctgatctcaaacacatagtttcagagattttttat
ggcctgcagtggtgtgaagaaatggagttttcacccctcacagtgtctgaatatcataaa
ttgctccagtcctggagtttggaacagaaaattcacaatatcagcctgatcaaatccgct
cttacagacacactttttacaagatcacaagaaaatggatctctctggtcactgtgtctg
gcgaaatacttgcaaatcaataaaatggacccaggtgacatcaaaggcttatatggaagt
gttgaaagtttctttcccctctcagagcacagtgtgaatactctgcaggtgctctgtccg
tttctagccagcgaagacagagaatccctcatcgccttgtgtgtcgcagagctactcaac
tggcaggaccaagagcacgactgcagtgatggtgtgctgtgctgtctggcggtgttgctg
tgctgtctgcaggctgatgctgctgtggaggatgagattctgctggctgtcgtcagcacg
atcgctgaatggaggaacagtagagaggagtggttcctcttcaacagtgaccttgaaaag
gcttccgctgcaaggctgttgctggctgtagagatgatgcgtttcctgtgctggctggtg
gatcgctctcctgcagtgttgggaaacacttattgggatctcctgctctgctccatgctg
gcctggctggagactgccagtgaaaacagcgctgtgttctggaatccttgggtgcagctg
tttgtatgcacaaactgtgagctgattgttaggctgagtgagtttttcacatcgccccct
gctggtgtgttggagcagcttccagcagaactgagctccgagtggaaggagttctttcag
gaggggattcacaaccttctgctcccgctgcttattaagatccccatggactttccagat
ccagatgaccctatgttccccctaccagtgttgagggcggtgggggaggctctcacctac
atccctgtggagctgctcactcagaataaactccctcctcgctttgtagccgaccagaag
agtagcctgtctgagcccctgcagacccttctgaacagcctctcacccctgctgctcttc
agagcccgaccactgcagctcgccgtctaccacatcctgaacaaggtgatgcctttgttg
ccagagagcgacagtgaaagtgccagcgctaaatctgaggatgaggatggagaagaaccg
tgcttgtctcctccggcagcattgatgagcatcctttccaccacagaagagctgctggag
aatattctaggtgctgtacaagtgggcgagtttgcagtagtgcagccgctcagcatggag
cactgctgcattctgggataccttctgtcctggaaactcctcctcgcctttttcaaggct
tcttcttctcatctgcgagctcagtactctctgcatttaaagaagagccgttctcttcat
aaactcctgctccatctgtttcgtctgatgccagagagtccgtcaatgccgggacagtca
gcagcgcccaaaaccttcttcaccgagagtttgtctctctctcctggaaaaactgaaaat
ctacagtttgaggtttctcatctggcctgctctgtctactacggtgcgttaaaagacctg
cccgcaatggtgcgtctgtggtggaacagccaagagaaacgcatcttcagcatagtggat
aaattcaccagcaagtacgtcagcggcattttgtctgcacaggagatcagctcagtgcag
tccagcaccgtgacctttgagaacatgacggtgaaagcgcgttcagccacgcgggaggtg
atagcgacgtactctgtggaggatgttttcattgagctggtgattcagctgccgcagaac
tatcctctgggctccatcttagtggacagtgggcggagagtgggcgtggctgtgcagcag
tggcgcaattggatgctgcagcttagcacataccttactcaccagaatggtagtatactg
gagggtctgtcgctgtggaagaacaatgttgacaagcgttttgagggggtggaggactgt
atgatctgcttctctgtcattcatggatccaattactcgctgccaaagaaagcttgccgt
acctgcaaaaagaagttccactccgcctgtctatataaatggttcacgtctagcaacaaa
tccacgtgtcctctttgccgagagactttcttctaa
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integrated database retrieval system
