Danio rerio (zebrafish): 100537277
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Entry
100537277 CDS
T01004
Name
(RefSeq) uncharacterized protein isoform X1
KO
K08131
collagen type IX alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100537277
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100537277
09142 Cell motility
04820 Cytoskeleton in muscle cells
100537277
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dre00535
]
100537277
Proteoglycans [BR:
dre00535
]
Extracellular matrix (ECM) proteoglycans
Others
100537277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100537277
NCBI-ProteinID:
XP_073787500
ZFIN:
ZDB-GENE-230120-1
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All DBs
Position
19:complement(5080360..5141625)
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AA seq
942 aa
AA seq
DB search
MAPHFRSRDWLWTLAGCLTRMILFTSLCAPALAQLDLNRLDGDTVCPTMKNGQDDLPGFD
LITQFQLDVIPMKGVRKVEGSTPLQVAYRLDREANFQIPTRLNFPRGFPDEYSFMTTFRM
IKNTVNKVWNLWQVVDEDGLKQAGMRLNGDQQALEFFLTTLEGDVQTVTFPGLSVLFNTK
WHKVMVGVEKELVTLYVDCHQVDQKEIKRKGYVNTEGDTLIGRLDSDPNTSVVFELQWML
IHCDPKRAQRESCTELPLAEMFANAEPDPKPIPGPPGSPGPEGPRGPAGEDGRDGRDGIP
GTPGTPGAQGSKGDRGEVGLPGQRGLQGAPGPVGPMGPMGPRGPVGERGLPGFPGPAGPP
GPETVGPPGLPGKAGTPGDEGNIGPEGPPGPRGAIGLPGPPGPPGPAGPAGPQGAGNPEG
SGETCQTTCPAGPQGLPGLPGMKGHRGLSGVDGVPGIQGEKGDRGAAGEPGPAGRPGDDG
QRGPIGFTGPHGDKGDRGPPGFNGIPGPTGPPGSPGVEGIRGREGHPGPKGDDGAIGAPG
EKGAAGVKGDTGEAGNPGADGEPGATGEKGEPGLPGAIGVRGIVGIPGLPGKQGLVGPAG
QKGDTGAEGATGPVGLPGKDGAVGPPGEDGAPGPKGATGDTGKQGPVGPTGQQGIQGEKG
DHGLMGPRGIKGHTGHKGDQGPMGLVGPKGSEGDPGVPGDPGVKGDQGPTGIPGTKGERG
EKGQRGATGADGRPGQPGHEGLTGPQGARGLEGERGLVGPPGPRGLPGPKIQDEKIREIC
SAVVEEHLDAYKKELAKKPLPLGAPGTPGLMGPPGPPGPAGPAGEAGPRGVMGPKGPQGY
YGLPGKPGAKGDSGQKGDKGDNGIGIAGLPGEPGPQGPAGKPGIGKDGQDGAKGEPGLNG
TPGTPGARGATGAPGLCDPSNCYRPQPLYLLGGKKSVNIKGP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcatttcaggagtcgggattggctttggacgttggcgggatgtttaacacga
atgattctcttcacatcactctgtgctccagctctcgctcagctggatttgaacagatta
gatggcgacacggtgtgcccgaccatgaagaatggacaagatgaccttccagggtttgat
ctgatcacacaattccagctggatgtgatccctatgaagggtgtccggaaggtggaagga
tctacaccacttcaggtggcgtacagactcgaccgagaagccaacttccagattccaacc
cggctgaactttcccagaggcttcccagatgagtattccttcatgaccaccttccgcatg
atcaagaacaccgtgaacaaggtgtggaacctgtggcaggtggtggacgaggatggactg
aagcaggccgggatgcgtcttaacggggatcagcaggctctggagttcttcctcaccacc
ctggagggagatgtgcagaccgtcaccttcccaggcctttccgtgctcttcaacaccaaa
tggcacaaagtgatggtgggcgtggagaaggagctggtgacgctgtatgtggactgtcac
caggttgaccagaaggagatcaagaggaaaggttacgtcaacacagagggagacactctg
atcgggaggctggattcggaccccaacacttctgtagtgtttgagctgcagtggatgctg
attcattgtgacccgaagagagctcagagagagagctgtaccgaacttcctctggctgag
atgtttgccaatgctgagccggatcccaaaccaatccctggtcctcctggttctcctggt
cctgaagggcctcgtggtccagcaggagaagatggcagagacgggagagatggtattcca
ggcaccccgggcactcctggagctcagggcagtaaaggagatcgaggagaggttggtctg
ccgggacagagaggactgcagggcgctccgggaccagtgggaccaatgggccccatggga
cctcgagggccagtgggagaaagaggtctccctggtttccctggacctgctggaccccct
ggaccagagactgttgggcctccaggtcttccagggaaagctggaactccaggagatgaa
ggaaatatcgggccagagggtcctcctggaccaagaggagcaatcgggctcccaggacca
ccaggcccaccgggaccagcaggaccagcagggccacaaggtgctgggaaccctgaggga
agtggggagacttgccagacaacgtgtccagctggaccacagggactgcccggtctgcca
ggaatgaagggacatcgtggtctttccggtgtggacggagtgccaggcattcaaggtgaa
aagggagacagaggggccgctggagagccaggtcctgctggacggccaggagatgacggt
cagcgagggccaataggattcactggaccccatggtgataaaggagatcggggtccgcct
ggattcaatggcatcccaggacccactggaccaccaggatcaccaggtgttgaaggcatc
agagggcgagagggacatcctgggcctaaaggagatgatggtgcgattggagctccggga
gagaagggagctgctggtgttaaaggtgacactggtgaggcaggaaacccaggagctgat
ggagagccaggagctacaggagagaagggagaaccaggcctgcctggagccattggtgtc
agaggaattgtgggaattccgggtttgccaggaaaacagggactggtgggacctgcaggc
caaaagggtgatacaggcgctgaaggagctactggtccagttgggcttcctggcaaagat
ggagccgttggaccaccaggagaagatggagctcctggacccaaaggagccactggtgac
acaggaaagcagggtccagtcggcccaacaggtcaacaaggaatccagggagaaaaagga
gaccacggcctcatgggtcctcgtggaatcaagggtcacacgggtcataaaggagaccag
ggcccgatgggtctcgtcggtcctaaaggaagcgagggagatccaggtgttcccggagat
ccaggcgtgaagggggatcaggggcctacgggtattcctggaaccaagggagagcgtggt
gagaaaggccagagaggagctacaggcgctgatgggcgtccaggacagccgggtcatgag
ggtctgacgggaccacagggagccagaggtcttgaaggagaacgaggactggtgggacct
cctggtcccagaggtctacctgggcccaagatccaagatgagaagatccgtgagatctgt
tcagctgttgttgaagaacatttagatgcctacaagaaggaattagccaagaaacctctt
ccccttggagccccagggactccaggactgatggggccacctggacccccgggacctgca
ggtcctgctggagaagccggaccaagaggagtcatgggccccaagggacctcaaggatac
tacggccttcctggaaagccaggcgccaaaggtgattcaggacaaaaaggtgacaaggga
gataatggaattggaattgcaggacttcctggtgaacctggacctcaaggaccagctggc
aagcctggcattggtaaagatggtcaggatggtgccaaaggagagcccggtttgaatggg
accccaggaacaccaggagcaagaggagccactggtgcacctggtctttgcgatccttca
aactgctacaggcctcaacctctttatctgcttggtggcaaaaagtctgtcaacatcaag
ggtccatga
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