Danio rerio (zebrafish): 325052
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Entry
325052 CDS
T01004
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
325052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
325052
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
325052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
325052
NCBI-ProteinID:
XP_073808697
ZFIN:
ZDB-GENE-030131-3777
Ensembl:
ENSDARG00000040031
LinkDB
All DBs
Position
6:complement(48463828..48476246)
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AA seq
412 aa
AA seq
DB search
MAEMYIRVAEEENEEPMEIPSEDDGTVLLSTVSAQFPGACGLRFRSPVSQCMRGVRLVDG
ILHAPENGWGNLVYVVNYPKETVLPDNKRKMDEIDASSATKIKRGDQKTSDLIVLGLPWK
TSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQSKVMTQRHMIDGRWCD
CKLPNSKQGIDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAAALCGEDLIIKGVSVHISNAEPKHNNTRQMMERAGRFGNGFGGQGFAGSRSNMG
GGGGGSSSSLGNFGNFNLNPAMMAAAQAALQSSWGMMGMLAQQNQSGTSGTSTSGTSSSR
DQAQTYSSANSNYGSSSAALGWGTGSNSGAASAGFNSSFGSSMESKSSGWGM
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggccgagatgtacattcgagttgcggaggaggagaatgaggagccgatggagatcccg
tcagaggatgatggcacggttttgctttccacagtgtccgctcagtttccaggggcttgt
ggtctgcgcttccggagcccagtgtctcagtgcatgaggggggttcgtctggtggacggc
attctgcatgcacctgagaacggctggggaaacctagtctatgtggttaattacccaaaa
gaaactgttctgccagataataagaggaagatggatgagatcgatgcttcatctgcgacc
aagatcaagagaggagatcagaagacttcagatctgattgtgctgggtctgccatggaag
acttcagagcaagacttaaaagactacttcggtacatttggggaagtcatcatggtgcag
gtcaagcgggatgtgaagacaggaaattcaaaagggtttggctttgtgaggtttggagac
tgggagactcagagtaaggtgatgacacagcggcacatgattgatggccggtggtgcgac
tgcaaactgcccaactcaaagcaaggtatagatgaaccaatgaggagccgtaaagtgttt
gtgggccgctgcacagaggacatgactgccgatgagctccgtcagttcttcatgcagtac
ggagaggtcacagacgtctttattcccaaaccgttcagagcgtttgcttttgtcaccttt
gcagatgaccaggttgccgccgctttgtgtggagaagatctgatcatcaagggcgtcagt
gtgcatatctcaaacgctgagcccaaacacaataacactaggcagatgatggagcgggca
gggcgctttgggaatgggttcggaggtcagggttttgcaggcagccgaagcaacatgggt
ggtggtggtgggggtagctccagcagcttgggaaattttggcaatttcaatctaaacccg
gccatgatggctgccgcccaggctgccttgcagagtagttggggtatgatgggaatgcta
gctcagcagaatcagtcgggtacttcaggcacaagcacaagtggcaccagttcctctcga
gaccaagcccaaacatatagctcggctaacagcaattacggcagcagctcagctgctctc
ggctggggcaccggctctaactcgggcgctgccagtgctggctttaactccagttttggc
tctagtatggagtccaagtcatcggggtggggtatgtaa
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