Danio rerio (zebrafish): 393101
Help
Entry
393101 CDS
T01004
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dre04040
]
393101 (scn1laa)
Ion channels [BR:
dre04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
393101 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Zip
PFF1_TM
ATP-synt_B
IQ
SieB
Lustrin_cystein
ATP-synt_F6
Motif
Other DBs
NCBI-GeneID:
393101
NCBI-ProteinID:
NP_956426
ZFIN:
ZDB-GENE-040426-751
Ensembl:
ENSDARG00000086819
UniProt:
Q20JQ9
LinkDB
All DBs
Position
9:complement(51832860..51932121)
Genome browser
AA seq
1955 aa
AA seq
DB search
MAHMFTPPGPQSLRKFTRESLKAIESRIAEENAKKSKNTEERNKDNECSRKPNSGLEAGK
TLPFIYGEVPKGLVSTPLEDLDQFYSNHTTFIVVSKKKEIYRFNATPALYIFSSFNLLRR
ISIQILVHFLFNFIIICTILANCAFMVYTQTPDWAKNVEYVFTGIYTLEALVKITARGFC
VGRFTFLRDPWNWLDFIVIVMAYVTEFVDLGSVSALRAFRVLRALKTISVVPGLKTIVGA
LIQSVKKLSDVMILTLFCLSVFALVGLQLFMGILKQKCVYSTSFTENKEACYKNKTCRDY
INNPSNQYFLPGKKDALICGNSSDAGQCPEGYTCLKAGKNPDYGYTSFDSFGWAFLSLFR
LMTQDFWENLYQQTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATIDEA
LKKEEEFNAMLEQITRQEQEAEAAAEQSKCEGLSGEKTDSSSDASKLSSKSAKERRNRKK
KRQHQGESEKEEDSIKEGNDRKPNFTFAVDGKIRRSRDRSYTSPRQSPLSFQGSLLTPRR
DSKASVFSFRGRIHSDNNYADDEQSMFEETGSRRDSLFLPTRPERLFSNVSKSSLTPHLL
LPSNGKARYVDDSNGMVMVTSGASAPNSPVIALNTPEVSRKRAMFDDTCADSDDERRSRC
NSQNFSKAYRQSMRERALSVASGSNNPAECSEIFKQRCEEWWFEFAENYLIWDCSPTWLR
IKEVVHMIVMDPFADLFITICIVINTVFMAMECYPMDGPYSSMLSTANVVFIGIFTAEMI
FKVIALDPYSYFLEGWNIFDSIIVTLSLMELCLANVLSGIGFLRPFRLLRVFKLAKSWPT
LNMLIKIIGNSLGALSNLTLVLAIIVFIFAVVGMQLFGKSYGECVCKISSDCMLPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQPLCLTVFMMVMVIGNLVVLNLFLALLLSSF
SADNLAVSGEEDENNLQIAVRRIRKGFTFIKTCLQSFFRSGCLRKKKQKSADGNMIVNCK
ERKDSTNHTTIELVKSTGGTDLDSDTENFISNPSLTVSVPIAAEESDFECLNTEDFSSLS
SDLEEDKEKLSDVASSFSEGSTVDLRPLGKDGEDALELVLEEEAYPEPCFTAGCVRRFRC
CQVDEEKGIWKKWWLLRQTCYNIVEHSWFETFIVFMILLSSGALAFEDIYLDTRKSVKTI
LEFADKVFTYIFILEMLLKWVAYGFAKYFTNLWCWLDFVIVDVSLISLVANALNYSELSA
IKSLRTLRAFRPLRALSRFDGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIVGVNFFAG
KFSECINITTEQRLPVSEVYNKTDCERMGKGVRWRNVIINFDNVGNGYLALLQVATFKGW
MPIMYAAVDSRNPEEQPEYEVNLYMYLYFVIFIILGAFFTLNLFIGVIIDNFNQQKKKFG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPKNKIQGLIFDLVTKQAFDIFIMVLIWLN
MVTMMLETEDQSIEMTRALYWINVIFIVLFTTECVLKMIALRHYFFTVGWNVFDFIVVIL
SIVGMSLTEVIKKYFVSPTLFRVIRLARIGRVLRLIRSAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKKTAGIDDMFNFETFPNSMLCLFQITTSGGWDGLLAPML
NSKPPDCDPTKNFTGSSVVGDCGNPSIGIFFFVSYIIICFLIVVNMYIAVILENFSVATE
ESAEPLSEDDFDRFYEVWEKFDPKATQFMEYGKLSDFADSLDPPLRIPKPNRFQLMSMDL
PMVTGDRIHCLDILFAFTKRVLGEGGEMDMLHGQMEDRFMQSNPSKSSYEPITTTLRRKH
EDMSAAVIQRAFRKHLVRDSMKKVRNFKKKNKHQNGKVPSNQSMDKDMCNEDSDATAATS
SPPSYSSITENAKNKYEKDKHEKEVGDKGNQVKKK
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatatgtttactccgccaggacctcaaagtctccgtaagttcacccgcgagtcc
cttaaggccatcgagagccggatcgcagaggagaatgccaagaagtccaagaacacggag
gagagaaataaagacaatgaatgtagcaggaaacccaacagcggtctggaggccgggaaa
actctgccgtttatatacggagaagttcccaaaggactggtgtctacaccgctggaggac
ctggaccagttctacagcaaccacacaacttttatagttgtgagcaaaaaaaaggaaatc
taccgtttcaacgccactcctgccttgtacatcttcagttccttcaaccttctgaggaga
atatcaattcagattttggtacattttttgttcaattttattataatctgcactattctg
gcgaactgtgcgttcatggtctacacacaaaccccggattgggccaagagtgtagaatat
gtcttcactgggatatacactttagaagcattggtcaagatcaccgccaggggattctgt
gtgggacgctttacttttctcagagatccgtggaattggttggattttattgttatagtc
atggcatatgtaacagagtttgtggatttggggagcgtgtccgccctgcgagcattcaga
gttcttcgagccctgaaaactatatcagtcgtcccagggctgaaaaccatcgttggtgct
ctgatccagtcagtgaagaagctctcagatgtcatgatcttgacccttttttgcctgagt
gtttttgcattggtgggactccagctcttcatgggaattctaaagcagaaatgtgtgtat
tcgacatcttttactgaaaacaaggaagcatgttacaagaacaaaacatgcagggattac
attaacaatccaagtaatcaatatttcctaccaggaaaaaaagatgcactgatctgtgga
aattctaccgatgctgggcagtgtccagagggatatacgtgtttaaaagcaggtaacaat
ccagattatggttacacaagctttgattcgttcggctgggctttcctttccttgttcaga
ctgatgactcaagacttctgggagaatctttaccaacagactcttcgggccgctgggaaa
acctatatgatttttttcgtgctggtcattttcttgggatccttctacctggtgaacctc
atcctggctgtagtcgccatggcatacgacgaacagaatcaagccacgatcgacgaggct
ttgaaaaaagaggaagagttcaacgccatgcttgagcagatcacgagacaggagcaggaa
gctgaggctgcagccgaacagtccaagtgtgagggtctcagtggagaaaagacggacagt
tcctcggacgcctccaaactcagctccaaaagtgccaaagagcgacgcaaccgcaagaaa
aagagacaacaccagggggaaagcgagaaagaggaggattccataaaagagggaaatgac
agaaagcccaacttcacttttgcagtggatggaaagatccggcgatcacgggacagatca
tacacgtctccacgtcagtcccccttgagttttcagggttccctcctcactcctcgccgg
gacagcaaagcgagcgtcttcagttttcgtggacgaatccattcagataacaactacgcc
gacgacgagcagagcatgtttgaggagacgggcagccgaagagactctctgtttcttccc
actcgacccgagcgtcttttcagcaacgttagcaaaagcagtctgactccgcacttactg
ctgccttctaacgggaaagcacgctacgtggatgacagcaacgggatggtgatggtgaca
agtggagcatctgcaccaaactcccctgtcatagccctgaatacaccagaagtgtcccga
aaaagagctatgtttgacgacacttgtgcagacacagatgacgaacgcagaagcagatgt
aattcacagaacttttcgaaggcttatcggcagtctatgagagagagagctttgagtgta
gcaagtggcagcaacaaccctgctgaatgttcagagatctttaaacagaggtgtgaggag
tggtggttcgagtttgcggagaattatttgatctgggattgcagtcccacatggctgagg
ataaaggagatcgtccacatgattgtgatggacccgtttgcggatctgtttatcaccatc
tgcattgtgataaacacagtattcatggccatggagtgttaccctatggatggaccatac
tctagtatgctttcaactgctaatgtggttttcattggcatcttcacagcagagatgata
ttcaaggtcattgcgttggacccgtacagttattttctggaaggctggaatatcttcgac
agcatcattgtcactttgagtctgatggaactttgtctggcaaatgttttgtctggaatt
ggatttctaagaccatttcgactgcttagggtctttaaactagcgaagtcgtggccaacg
ctgaacatgcttatcaagatcatcgggaactctttgggcgctctcagcaacctgacgctg
gttctggccatcatcgtcttcatctttgctgtggtgggcatgcagctgttcggaaaaagc
tacggcgagtgtgtgtgcaagatctcatccgactgcatgcttcctcgctggcacatgaac
gacttcttccactcgttcctgatcgttttcagggttctctgcggagagtggatcgagacc
atgtgggactgcatggaggtggcgggacagcctttgtgcttaactgtgtttatgatggtc
atggtgatcggaaatctggtggttctgaatctgttcctggctctgctgcttagctccttc
agtgccgacaacctggcggtcagtggtgaagaagacgaaaacaacctgcagatcgctgtc
cgtcgaatcaggaaaggcttcgctttcatcaaaacctgccttcagagtttcttcaggagt
ggctgtttacggaagaagaagcagaagtctgcagatggcaacatgatcgtgaactgcaag
gaaaggaaagatagcacaaaccacactacaatagagctggttaaaagcactggaggaacc
gatctggatagcgacactgagaattttatcagcaacccgagcttgactgttagtgtcccg
attgccgcagaggagtctgattttgagtgtctgaacacagaggatttcagcagcctttct
tcagacctagaggaggataaagagaaactgtctgacgtggcgtccagcttctcagaggga
agcacagtcgacctcagaccactcggcaaagatggagaagacgccctggagttggtactc
gaggaagaagcatatcctgaaccctgtttcacagcagggtgtgtccggaggtttcgatgt
tgtcaggtggacgaagaaaagggcatatggaagaaatggtggctgctgagacagacctgc
tataacatagtggagcacagctggttcgagaccttcatcgtcttcatgatcctgctgagc
agtggtgctctggcttttgaggacatttatctggacacaaggaagagcgttaagaccata
ctggagtttgctgataaagttttcacctacatcttcattcttgagatgctgctaaaatgg
gtcgcatatggattcgccaaatacttcaccaatctgtggtgctggctggattttgtcatt
gttgatgtctcgctgatcagcctggtggccaacgccctcaactattcagagctgagtgcc
atcaaatccctgcgaacactcagagccttccggccacttcgggctctctcacgctttgat
ggaatgagggtggttgtgaacgctcttctgggcgccattccctccatcatgaacgtcctg
ctcgtctgcctcatcttctggctcattttcagcattgtgggtgtcaacttcttcgctggg
aagttttctgaatgtataaacataaccacggagcagcgcctgcctgtctcagaggtctat
aacaagacagactgtgaaagaatggggaaaggagtccgctggagaaatgtgatcattaac
tttgacaatgttgggaatggatacctggccctgctgcaagtggcaacatttaaagggtgg
atgcctattatgtatgcagcggtagactctcgcaatccagaagaacagccggagtatgag
gtgaatctgtacatgtacctctattttgtcatcttcatcatccttggagccttcttcaca
ttaaacctcttcattggcgtcatcattgacaacttcaatcagcagaagaaaaagtttggg
ggtcaggatattttcatgacagaagaacagaagaaatattacaacgccatgaagaaacta
ggctcaaagaaaccccaaaaacccattccaagaccaaataacaagattcaaggactcatc
tttgacctcgtaaccaaacaggcctttgacattttcattatggtcctgatctggctcaac
atggtcactatgatgctggagacggaggatcagtcgattgaaatgacccgtgcgctgtac
tggatcaatgtcattttcattgtgctcttcaccaccgaatgcgtcctgaagatgatcgct
ctgcgccattacttcttcaccgttggctggaacgtgtttgactttatcgtggtcatcctg
tctatagttggcatgtctcttacagaagtcatcaagaagtacttcgtctcgcccaccttg
tttcgtgttattcgcctggcccggatcggccgcgtcctacgcctcattcgaagcgccaaa
ggcatacggacccttctgttcgcgttgatgatgtcccttcctgcccttttcaacatcggc
ctccttctgttcctcgtgatgttcatctacgccatcttcggcatgtccaactttgcctac
gtcaaaaaaacggccggcatcgacgacatgttcaacttcgaaacctttcccaacagcatg
ctctgtttgtttcagataacaacatcggggggctgggacggcctgttagcgcctatgcta
aacagcaaacctccagactgtgatccgacgaaaaacttcactggaagttcggtcgtaggc
gactgcgggaatccgtccatcggcattttcttcttcgtaagctacatcatcatatgtttt
ctcattgtagtaaacatgtacatcgctgttatcctggagaactttagcgtagccactgaa
gagagtgccgaaccgttgagcgaagacgatttcgacaggttttatgaagtttgggagaaa
ttcgaccccaaagcgacgcaattcatggaatacggtaagttgtcagacttcgccgattct
ctagatcctccgttgcggataccaaaacccaaccggtttcagctgatgtctatggatttg
ccaatggtgactggagatcgaatccattgtttggatattttattcgccttcaccaaacgc
gttctaggggaaggtggtgagatggatatgcttcatggacaaatggaggaccgattcatg
caatccaatccgtcaaaatcttcttacgagcccattacgacaactttgcgcagaaaacac
gaagatatgtctgctgcggtcatccagagagccttcaggaagcacttagtccgagatagc
atgaagaaagttcgcaatttcaagaaaaaaaacaagcatcagaatgggaaagtgccgagt
aatcagtcgatggataacgatatgtgcaatgaagactcggacgcaacggcagcaacgtcc
tctccgccgtcctacagtagtatcacggagaacgccaaaaataaatacgagaaggacaag
catgagaaggaaatgggcgacaaaggtaatcaagtgaagaagaagtag
DBGET
integrated database retrieval system
