Danio rerio (zebrafish): 394119
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Entry
394119 CDS
T01004
Symbol
rad54l
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
394119 (rad54l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
394119 (rad54l)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
394119 (rad54l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Rad54_N
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
394119
NCBI-ProteinID:
NP_957438
ZFIN:
ZDB-GENE-040426-968
Ensembl:
ENSDARG00000018623
UniProt:
F1Q8K0
Structure
PDB
PDBj
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All DBs
Position
6:4182303..4200005
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AA seq
738 aa
AA seq
DB search
MRRSLAPSQVAKRKQGPDSDDEEDWEPDMEPQSKRDCREKYISPYRKPLTPLTNRPVCAD
GNEHEAFIRKILSKPFKIPIPNYTGVLGLRALGLRRAGVRKALHDPFEDGALVLYEPPAI
SAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMG
LGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGG
SKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN
QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD
ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL
FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS
TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT
MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR
VWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFS
LNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDA
AVSFVFHQRSHEDQRGVV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaagtctagcgccaagtcaggtggccaaaagaaaacaggggccagattcagac
gatgaggaggactgggagcctgacatggaaccacagtgcaagagagactgtcgagaaaag
tacatctccccttacagaaaacccctgaccccgctgaccaacagacccttctgcgctgat
ggcaatgaacatgaagccttcattcgcaagatcttatccaaaccatttaaaattcctatt
ccaaattacacaggcgttttgggtttgcgggctctgggtctgagacgagctggtgtgagg
aaagctctgcacgacccgtttgaagacggagctctggttctgtatgagcctccggtcatc
agcgctcatgacctgatcaaagcagacaaggagaagctgccagtgcatgttgttgtagat
cccgtgctcagtaaagtgcttcgaccacatcagcgagagggtgtaaagttcttgtgggat
tgtgtgacgggacgacggattgagaactcctacggctgtattatggcggatgagatgggt
ctgggaaaaacattacaatgcatcactctcatctggactttactgaagcagagtccagac
tgcaaacctgagatcgataaggtcatcgtggtctctccgtccagcctggtgagaaactgg
tacaatgaagtgggcaagtggctcggtggacgcgtgcagcctgtggccattgacggaggc
tccaaagacgagatcgacagcaaacttgtaaacttcatctctcagcaaggcatgagaata
ccaactccaattctgatcatttcctatgaaactttccgtctccacgctgaagtcctgcac
aaaggcaaagtcggactggtcatctgtgatgagggtcaccggctgaaaaactcagacaat
cagacatacctggctctgaactccatgaatgcccagaggagagtgctgatatctgggact
cccattcagaacgacctgctggagtatttcagcttggtgcactttgtaaactctggcatc
ctcggcacagctcaggagtttaagaaacgcttcgagattcctatcctgaagggtcgtgat
gcagacgccagtgataaagacagagctgctggagagcagaaactccaggagctcatcagc
attgtcaacaggtgtttgattcgaaggacttcagatattctttccaagtatctgccagtg
aagattgaacaagtagtctgctgcaatctgactcctctgcagaaagagctgtacaagtta
ttcctgaagcaggccaaacctgtggagagtctgcagacggggaagatctccgtgtcttct
ctgtcctccatcacctcgctaaagaagctctgcaaccatcctgccctgatctacgagaag
tgtctgacaggagaagagggttttgacggagcactggatctcttcccacagaattattca
accaaagcagtcgaaccacagctctcagggaagatgctggtgttggattatatcttggcg
atgaccagaacaacgaccagtgataaagtggttctggtctccaactacacacagactttg
gatctgtttgaaaaactgtgtcgaaacagaagatacctttatgttaggctggatgggacg
atgtccatcaagaagagagccaagattgtggagagattcaacaacccctctagcccagag
ttcatcttcatgctgagcagtaaagctggcggctgtggcctcaatctgattggtgcaaac
cgattggtgatgttcgacccggactggaatccagccaatgacgagcaggcgatggctaga
gtgtggagagacggacagaagaagacctgctacatctacagactgctgtcgacgggaacc
atagaggagaagatcctccagagacaggctcataagaaggccttgagcagctgtgtagtg
gatgaggagcaggacgtggagagacatttctctctcggagagcttcgggaactcttctcg
ctcaatgagaaaaccctcagcgacacacatgacaggtttcgctgcaggcggtgtgtgaat
ggccgacaggttcgtcctcctcctgatgattcggactgtacctgtgatctctccaactgg
catcactgcgctgataagcgaggcctgagagacccggtgctgcaggcttcatgggatgca
gcagtctctttcgtcttccaccagcgctcacacgaggaccagagaggagttgtctga
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