Danio rerio (zebrafish): 406548
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Entry
406548 CDS
T01004
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b precursor
KO
K08131
collagen type IX alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
406548 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
406548 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
406548 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dre00535
]
406548 (col9a1b)
Proteoglycans [BR:
dre00535
]
Extracellular matrix (ECM) proteoglycans
Others
406548 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
406548
NCBI-ProteinID:
NP_998429
ZFIN:
ZDB-GENE-040426-2410
Ensembl:
ENSDARG00000031483
UniProt:
B8A4T6
Q6NUV1
LinkDB
All DBs
Position
13:complement(42628193..42668800)
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AA seq
681 aa
AA seq
DB search
MARAAGVRGPFLLILLEITIICTAQRTGSGTPGPAGVPGIDGIDGERGDTGEDGSAGLDG
DAGKPGSAGLPGLPGADGLIGPIGEPGLDGPPGQKGEPGKPGIRGEAGVGPDGPMGPPGP
GGLPGELGKVGPPGAMGVRGPQGPRGPTGPRGAAGMLGGSMELCPNACPPGAPGHPGLPG
MKGHKGVKGESGEPGKQGHKGEEGDQGASGEVGAQGPTGPQGIRGATGMIGAKGETGPRG
VDGDPGPQGVAGAAGDRGQRGGVGETGPKGEQGPQGPRGNTGLPGPKGDGGLPGVDGREG
IPGMPGAKGDKGKAGSPGEIGLQGLPGLPGIPGPKGGGGEKGNAGQPGLIGTMGSSGKQG
ERGEQGELGPIGPIGLAGDRGEQGPVGPMGKPGARGPKGDLGLPGLPGPPGLPGIKGDRG
EGGEPGPKGEPGDQGAEGTPGDKGDVGDPGQSGAKGEVGNQGDPGNRGPQGARGQPGIEG
PAGSAGPRGMQGNRGVPGPRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESG
AVGLPGKPGPPGPPGPQGDSGFPGHAGSRGLPGLKGPPGLMGVKGPKGEMGDRGDRGPTV
RGPKGQPGPPGLPGEPGIPGYGQDGRDGERGPPGSPGQPGVPGPPGSAGPPGYCDPSACN
LSAGAAHQSLKDSSMKGPGGN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgctgcaggtgtgcgcgggccctttttactcattttgttggagataaccatc
atctgcacggcgcagaggactggatctgggactcctggtcctgctggtgtgcctggaata
gatggcattgatggggagagaggtgacaccggtgaagatggctctgctggtcttgatgga
gatgctggaaaacctggttctgctggacttcctggattacctggagctgatggtctcata
ggccccattggagaaccaggcctcgacgggcccccaggacaaaagggagaacctggtaaa
cctggtatcagaggagaggcgggtgttggacctgatggaccaatgggcccaccaggacca
ggaggacttccgggagagctgggaaaagtgggaccacctggagccatgggtgtgagagga
ccacagggacccagaggaccaacagggcccagaggagctgcagggatgttgggtggatct
atggaactgtgccctaatgcatgcccaccgggagcacctggccatccaggattgcctggg
atgaagggtcataaaggtgtgaaaggagaatctggagagcctggaaaacaaggacacaag
ggagaggaaggggatcagggagcctctggagaggtcggagctcaaggccctactggacca
cagggaattcgaggtgctaccggaatgattggagcaaaaggagaaacggggcctcggggt
gttgatggtgacccgggccctcaaggtgttgcaggggctgcgggggatcgaggacaacgc
ggaggagtgggggaaaccggtcctaaaggagaacagggacctcaagggccaagaggcaac
actggtcttccagggccaaaaggagatggcggtttgccaggagtggacggacgtgaggga
atccctggcatgccaggtgccaagggcgacaaaggaaaagctggaagccccggggaaatt
ggccttcaaggactgcctggtttaccaggaatcccaggaccaaaaggtggaggaggagag
aagggtaacgctggacaaccaggccttattggcactatgggatcttcaggcaaacaaggt
gaacgtggagaacaaggagaactcggacccattgggcctattggactagctggagaccgc
ggagaacagggacccgttggaccgatggggaaaccaggagccagagggcctaaaggtgac
ttgggtttgcctggacttcctggaccgccgggcctgccaggaataaaaggagaccggggt
gaaggaggtgaacctggaccaaagggagaaccgggagatcaaggtgcagagggaacacca
ggagacaagggagatgtcggtgaccccggacaatctggagccaaaggcgaagttggaaac
cagggtgatccgggtaacagagggccgcagggagctcgagggcagcctggcattgagggg
cctgctggtagtgctggtccacgcggcatgcagggcaacagaggagttccaggacctcgt
ggctctcagggaccagcgggcaaggaaccgagtgatcaacacatcagacaagtgtgcatg
cgagttatgcaggagcagttggcacagttggctgccagtctgaggagaccagagtctgga
gcagttggactaccaggcaaacctggacctccgggacctcccgggccccaaggtgacagt
ggtttcccggggcatgcaggatccagaggattgccgggacttaaagggcctccgggactg
atgggtgtcaaggggccaaaaggtgagatgggagacagaggagacaggggtccaacagtt
cggggacccaaaggccagccgggacctcctggactaccaggtgaacctggaataccagga
tatggtcaagatggacgtgatggagaacgtggtccacctggatctccaggtcagccaggt
gttcctggaccacccggttcggccggaccaccaggctactgcgatccttcagcctgtaat
ctaagcgcaggggccgcacaccaatccctcaaagactctagcatgaaaggaccaggcgga
aactaa
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