Danio rerio (zebrafish): 559447
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Entry
559447 CDS
T01004
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha B
KO
K04834
voltage-gated sodium channel type II alpha
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dre04040
]
559447 (scn1lab)
Ion channels [BR:
dre04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
559447 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
RhlB
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
559447
NCBI-ProteinID:
NP_001038360
ZFIN:
ZDB-GENE-060906-1
Ensembl:
ENSDARG00000062744
UniProt:
F1QXF5
LinkDB
All DBs
Position
6:complement(11202961..11279557)
Genome browser
AA seq
1996 aa
AA seq
DB search
MAAQLLVPPGPDSFRPFLPESLAAIEQRIAEEVAQRPKGERRPDDDDENGPKPNRDLEAG
KPLPFIYGDVPPHMLSVPLEDLDTYYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLR
RISIRVLVHSLFSFVIMCTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVKMPEVNVTDNLTDYSTELHN
STFNWTEYISDSNNYYFIPGRRDALLCGNSSDAGQCPEGFTCIKAGRNPDYGYTSFDTFS
WAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQ
NQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGLSEESSSGGSRLS
SKSAKERRNRRKKRKQREEEEKADQEKFHKSASEDSIRRPGFRFSIDANRLSYEKKCSTP
NQSLLSIRGSLFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFEDSDSRRGSLFVPR
CVERRSSTVSHCSLTAPRIMLPANGKMHCTVDCNGVVSLVGGTSVPTSPIGRLLPEGTTT
ESDVRKKRSGSHQPSDYLEETVARKRAMSVASILTNTMEELEESRQKCPPCWYKFANSFL
IWDCSPAWLKVKEIMNMIVMDPFVDLAITICIVLNTLFMAMEHYPMTTQFSHLLSVGNLV
FTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLLRV
FKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYRECVCKISES
CELPRWHMDDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGNLVVLNL
FLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQKGIALVKSTLRQFLQSLFLAGSKPRS
LDEEKPLDDLHSDGKENCLSNHAPVAVDLTKDYLKEGCVSPGNGVESHVKYGIEEGDYMS
FIHNPSLTVTVPIAVGESDFENLNTEDFSSESSDVEGSKEKLPVDTVLSSSEGSTVDIRP
PGEGAESVELEPEESLDPEACFTEGCVMRFQCCQVDVEKGKWKSWWILRKTCFIIVEHNW
FESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEYADKVFTYIFILEMLLKWVAYGFAKY
FTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKSLRTLRALRPLRALSRFEGMRVVVNA
LLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCVNITNDELFPVSVVNNKSDCYAL
IQNNDTARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDLEQQPVYETNLYM
YLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPANKFQGLVFDLITKQAFDIIIMILICLNMVTMMVETDDQTEDMDNILYWINLV
FIILFTGECVLKMISLRHYFFTIGWNVFDFVVVILSIVGMFLSEMIEKYFVSPTLFRVIR
LARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREA
GIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKQDPDCDSEMEHPGSFYRGNCGNP
SVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPNA
TQFVEYNKLSDFADALDPPLRIAKPNKIQLIAMDLPMVSGDRIHCLDILFAFTLRVLGEE
GEMDALRGQMEDRFMASNPSKVSYEPITTTLRRKQEEMSAVVIQRAFRRHRIRQTVKKAS
EAYRKQLQDGGGHIPEKEVLVIGKFQENSASDKTDMTPSSASPPSYNSVAKSEKDKYEKE
RREKEDKAKDARDRKK
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagctgctcgttccacccggacctgacagcttccggcccttcctgcccgag
tctctcgccgctatcgagcaacgcatcgcagaggaggtggcccagaggcccaaaggcgag
agacggcctgatgacgacgacgaaaatgggcccaaacccaacagagatttggaggcggga
aaacccctgccgttcatctacggagatgttccgccacacatgctgtccgtcccgctggag
gacctggacacctactacagcaaccaaaaaacctttatagttttgaatcgtgggaaggct
atattccgctttaacgctacgccggccttgtatattttgagtcccttcaatccattaagg
agaatctccatcagggtcctggtgcattctctgttcagttttgtgatcatgtgcacaatc
ttgaccaactgcgccttcatgacgctcagcaatcccccagaatgggccaagaacgtggaa
tacacgttcacagggatctacaccttcgagtccctgattaagatcctggctcggggcttc
tgcgtggggaagttcactttcctgagagacccctggaactggctggatttcagtgtcatt
ctgatggcgtatgtaactgagtttgtaaacctaggcaatgtgtcagctctccgcactttc
agagtgctcagagctttgaaaactatctcagtcatcccaggactgaagaccatcgtcggc
gctttgatccagtcagtgaagaagctgtcagacgtgatgatcctgaccgtgttctgtcta
agtgtgtttgctctgatcggactgcagctctttatggggaacctgcggcagaagtgtgtg
aagatgccggaggtcaatgtcactgacaacctaaccgactacagcacagagctgcacaac
tccaccttcaactggacagagtacattagtgattctaacaattattatttcatcccaggc
cgcagggatgctttgctttgtgggaactcaagtgatgcagggcagtgccctgaaggtttc
acgtgtataaaagcagggcgtaatccagactacggctacacaagcttcgacacgttcagc
tgggcttttctctcactcttccgactcatgacccaagacttctgggaaaacctctaccag
cagactctgcgtgcagctggaaagccctatatgatcttctttgttcttgtgatcttcctg
ggctccttctatctggttaatctcatcctggctgtggtggccatggcgtatgatgagcag
aaccaggccactatagaggaggctcaacagaaagaggaagagtttcaggccatgctggag
cagttgaagagacaacaggaagaggcgcaggttgccgcggcagcagcgacagagagcggg
gagtacagcggaagggggggcctgtcggaggagagctcctctggggggtctagactgagt
tcgaagagtgctaaagaaaggaggaaccgcaggaagaagagaaaacagagagaggaagag
gagaaagccgaccaggagaaattccacaagtctgcctcagaggacagcatcagacggccc
ggctttcgcttttccattgatgccaaccgactctcatatgaaaagaaatgctcaactcct
aatcagtctcttctcagcattcgtggatctctcttttctccacggaggaacagtcgtgca
agccttttcagttttcgtggcagagctcgagactttggctcagagaatgatttcgcggac
gatgagcacagcacatttgaggacagcgacagtcgacgaggatccctcttcgtgcctcgt
tgtgttgagaggcgaagttctaccgtcagccactgcagcctcacagcacccaggattatg
ctgccagccaacgggaaaatgcactgcacagtagactgcaatggagtggtttccctggtt
ggcgggacatctgtgccaacatcaccaattggacgtttgctacctgagggcacaacaacc
gagtctgacgtccgtaagaaacgttcaggatcacaccagccttctgattacctcgaggag
acagtagccaggaaaagagcaatgagcgtggccagcattctcaccaatactatggaagaa
ctggaggaatcccggcagaagtgccctccttgttggtacaagtttgccaacagcttcctc
atctgggactgcagtccggcttggctgaaggtgaaggagatcatgaacatgatcgtgatg
gatccgtttgtagacctggccataaccatctgcattgttctcaacaccctcttcatggct
atggaacactacccgatgactacccagttcagccatctgctgtcagttgggaacctggta
ttcacaggaatcttcacagcagagatgtgtctgaaggtcattgctctggatccctattat
tatttccaagaaggctggaatatctttgatggcatcatcgtgagtctgagtcttatggag
ttgggcctggccaatgtggaggggctttcagtgctgcgctccttcagattgttaagagtt
tttaagctggcaaagtcctggcccaccctgaacatgctgattaagatcattggtaactca
gtcggtgctctgggaaatctaactctcgtcctggccatcattgtcttcatcttcgctgtg
gtgggaatgcagttgttcggaaagagttaccgcgagtgcgtttgcaagatctcagaaagt
tgtgagttgccgcggtggcacatggacgatttcttccactccttcctgatcgtgttccgg
gtactttgtggtgaatggatcgaaaccatgtgggactgcatggaagtggcgggacagtcg
atgtgtctcatcgtcttcatgatggtcatggtcattgggaatctggtggtgttgaacttg
ttcctggccttgctgctgagctctttcagtgccgataatctggccgccaccgatgacgac
agcgaaatgaacaacctgcagatcgccgtgggcagaatacagaaaggtatcgctctggtc
aagtccactctccgtcagttcctgcaaagcctcttcttggccggctctaaaccacgctcc
ctagatgaggagaagccccttgacgacctccacagtgacggcaaagagaactgcctgtcc
aatcacgctccggtagccgtcgatctcactaaggactatctgaaggagggctgtgtctct
cctggtaatggggtggagagtcatgtaaagtatggaattgaggaaggcgactacatgtcg
ttcatccacaatcccagcctcacggttacagtaccgatagcggtgggagagtcggacttt
gaaaacctgaacacggaagatttcagtagcgaatcatctgacgtggagggaagtaaagag
aagctacctgtcgatacggttctcagttcctcggaggggagcacagtggatattcgcccc
cctggagagggggcagagtctgtcgaattggagccggaggagtccctggacccagaggcc
tgcttcacagaaggctgtgtgatgaggtttcagtgctgtcaggtcgatgtggagaaggga
aaatggaagagttggtggattctcaggaaaacctgctttatcatagtagagcacaactgg
tttgagtccttcatcatcttcatgattttactcagcagcggagcactggctttcgaggat
atttacatcgagcagcgcaagaccataaagacggtgttggaatatgcagataaagtcttc
acatatatattcatcctggagatgcttctgaagtgggttgcatacggcttcgccaaatac
ttcactaacgcctggtgctggcttgacttcctgattgttgatgtgtcgttggtgagtctg
gttgcaaatgctcttggttattctgaactaagtgccattaagtccttgagaacactgcgt
gctcttagacctttgagagcattgtcacgctttgagggaatgagggtggtagtgaacgct
cttcttggagccataccttccatcatgaatgtgttgctggtgtgcttgatcttctggctg
atcttcagcatcatgggggtgaacctctttgccgggaaatattactattgcgttaatatc
accaacgacgagctgtttcccgtcagtgtggtcaacaataagtctgattgctatgctctg
attcaaaacaatgatacagcgcgctggaaaaacgtgaagattaatttcgataatgtggga
gccggatacctggcacttctgcaagtggccacatttaaaggatggatggacatcatgtac
gcagctgtagattctcgtgatttggagcaacagcctgtctatgaaacaaacctttacatg
tacctgtacttcgtcatattcatcatcttcggctccttctttaccctcaacctcttcatt
ggtgtcatcatcgataacttcaatcagcagaagaaaaagcttggaggtcaggatatcttc
atgacagaagagcaaaagaaatattacaatgctatgaagaagttgggatctaagaaacct
cagaagccaattcccagacctgcgaataagtttcaaggccttgtctttgacctaatcacc
aaacaagccttcgacataatcattatgatcctgatctgcttgaacatggtgaccatgatg
gtggaaaccgatgaccagacagaggatatggacaatattctgtactggataaacctggtt
ttcatcatcctcttcactggagaatgtgtgctaaagatgatctccctgcgccactacttc
ttcaccatcggctggaatgtgtttgactttgttgtggtgattctatcaattgttggcatg
ttcctctctgagatgatagagaaatattttgtatcgccaaccttatttcgagtcattcga
cttgcccgaattggtcgcattcttcgtcttatcaaaggagccaaaggcattcgtactctt
ctgtttgccttgatgatgtcacttcctgccttgttcaatattggcctcctcctcttcctg
gtcatgtttatctatgccatcttcggaatgtccaactttgcctatgtgaagcgggaagcg
gggattgatgacatgtttaactttgagacatttgggaactccatgctttgtctgtttcaa
atcaccacttctgcaggctgggacggcctcttggcacctatcctgaacaagcaagatcca
gattgcgacagcgaaatggagcacccagggagcttctaccgaggaaactgcggcaaccct
tcggtcggaatcttcttctttgtgagctacatcatcatctgcttcttgattgtggtcaat
atgtacattgctgtgatcttggagaacttcagtgtagctacagaggagagcgccgaaccg
cttagcgaggacgactttgaaatgttctatgaagtctgggagcggtttgaccccaatgcc
acacagtttgtggagtacaacaagctttctgactttgcggatgctctggatcctccatta
cgcattgccaagccaaacaagatccagctcatagccatggacctgcccatggtcagtggc
gaccgcatccactgcctggacatcctgttcgcctttaccctgagggtactgggagaggag
ggagagatggatgccctgaggggacagatggaggatcgtttcatggcctccaatccctca
aaagtctcctacgagcccatcaccacaactctcaggaggaaacaggaggaaatgtcagcc
gtcgtcatccaaagggccttccgacgacaccgtataagacaaacagttaagaaggcctct
gaagcgtaccgtaaacagctacaggacgggggtgggcatattccagagaaagaggtgctt
gtcattggaaagtttcaagagaactcagcgtcagacaaaacggatatgactccttcttct
gcctctccgccatcttataacagcgtggccaagtcagagaaagacaaatatgaaaaggag
aggcgagagaaggaggacaaagcaaaagatgcaagggacagaaaaaaatga
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integrated database retrieval system
