Danio rerio (zebrafish): 567771
Help
Entry
567771 CDS
T01004
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X2
KO
K06238
collagen type VI alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
567771 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
567771 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
567771 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
567771 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
567771 (col6a2)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
567771 (col6a2)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
567771 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
567771 (col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
567771
NCBI-ProteinID:
XP_009304443
ZFIN:
ZDB-GENE-070501-7
Ensembl:
ENSDARG00000061436
UniProt:
A0A8M3AXV0
LinkDB
All DBs
Position
11:complement(33922910..33960449)
Genome browser
AA seq
1084 aa
AA seq
DB search
MKEDPDFCSSWEKRRGNLSCSLASHSLPHFGLYSDFCFYLVRNVCLVVLNISHQSRSSLD
SLVLGRRVRMMSLSILLLLFVGVHAQGQTPAGSSCSPIKSTECPIDLYFAIDTSETIALQ
ENPPGSLVESIKDFTIRFAEKLQNVNYRGSVNITWAIGGLHFSQLQEFFSTITTKEKFIS
NLRPIRYLGRGTHIDCAITNMTKQLVRFPSRPDAKRFAVVITDGHVTANPCGGIKVAAER
ARDENIRIFAVASSRNLEETGLREIANSPAGVYRDKYMAVNLTGTRPVIVTSTIDRIYDT
MLHMAYQECYSTKCLETPGPPGPPGHRGQKGAKGDNGGAGLKGERGRPGDPGIEGPIGHP
GPKGEPGLKGEKGEIGAQGKKGVAGIAGRDGKDGQKGKFGRIGAPGCKGDPGDKGPDGHP
GDVGEPGLPGALGDKGDRGRPGRSGPPGPAGDPGPKGERGSPGSPGIPGTKGGAGTAGGP
GPKGDAGRRGDFGPKGSTGPNGAKGEKGEPGAEGPRGLAGEVGGKGSKGDNGLPGPRGPP
GAPGDAGRKGSSGDPGDSGPRGDPGPPGPKGDSGRPGFSYPGPRGPTGDRGEKGSPGPRG
SRGDCGPKGDPGLKGTPGEPGEPGPAGEPGQRGPRGDGGRDGDPGPEGDPGLTECDVMNY
IRETCGCCDCEKRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSIAKDPSSETG
TRVGVVQYSHNGTFQAIRLNDSKIDSMSAFKDAVKKLEWIAGGTWTPSALKFAYDNLIRD
SRRSKANVTVVVITDGRYDPRDDDKLLNYLCTDTSIDVNAIGIGDMFDQPEENESLKSIA
CRKDGRVMGMRRFADLVAEDFIDRIETVLCPDPVVICPDLPCKSEPAVANCIQRPVDLVF
MLDGSERMGQENFRYAREFVENVANRLTLAQGDDDERNARVALLQYGDENQHQLAFKLTN
NFTVIADGLANMRYLDSTSNVGSGIIYAINNIVTSRGTRLARRNAELSFVFITDGVTSNK
NLEEGISAMRRAEGVPTVIAMSNDVDKEILAKISLGDQTAVFRGEDFARLNKASFFERFV
RWIC
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggatccagacttctgttcaagctgggagaagcgcagaggaaacctctcctgc
agcttggcttctcactcactccctcattttggactttattctgatttctgcttctacctg
gttcggaatgtatgcttggtagtcctcaacataagtcatcagtcgagaagttctttagat
tctctggtcttgggaaggagagtgaggatgatgagcttgtcgatcctcctcctgttgttt
gtgggtgttcatgcacagggccagactccagccggctcttcgtgtagtcctataaagagt
accgaatgcccgatcgacttgtactttgctattgacacatctgagaccatcgctcttcag
gagaatccgccaggcagcttggtagagagtatcaaagatttcaccatcagatttgctgag
aagctccaaaatgtgaactacagaggatccgtgaacatcacctgggccatcggaggactc
cacttctcccagctccaggagttcttcagcaccatcaccactaaagagaagttcatcagt
aatctccggcccatcagatacctaggcaggggcacgcacattgattgcgccatcaccaac
atgaccaagcagctggtccgctttccatccagacccgatgccaaacgattcgccgtggtc
atcactgatggtcacgtgactgcgaacccatgcggagggatcaaagtggcggcagaacgg
gcacgcgatgaaaatattaggatcttcgctgtggcatcgtccaggaatttggaggagacg
ggactcagggagatagcaaactcacccgctggagtttaccgggataaatacatggcggtg
aatctcactggaacacggccggtcattgtgacgtccacaatcgatcgcatttatgacaca
atgcttcatatggcttaccaagagtgctactctaccaaatgcttggagactccaggacct
ccaggtcccccaggacacagaggacagaaaggagctaaaggagataatgggggcgctggc
cttaaaggtgaaaggggacgacctggagatcctggtattgaaggacccattggacatcct
ggtcctaaaggagagcctggtctcaaaggagaaaagggagaaattggagcacaaggaaaa
aagggtgttgcaggaatagctggccgtgatggaaaagatggacagaagggaaaatttggc
aggattggtgctcctggctgcaaaggtgatccaggtgacaagggtcctgatggtcatcct
ggagatgttggagagcctggtcttccaggcgctttgggagataagggtgatcgaggtcgt
ccaggaagatcaggtcctccaggcccagctggagatcctggaccaaaaggagagagagga
agtcctggatcgcctggaattcctggcacaaaaggaggcgctgggacagctggaggacct
ggacccaaaggagatgctgggcgaagaggagattttggacctaaaggaagcactggacct
aatggggcaaaaggagagaagggtgaaccaggtgctgagggacccagaggtcttgcaggt
gaagttggcggcaaaggatccaagggtgataacggacttccaggaccaagaggcccacca
ggagctcctggagatgcaggcagaaagggttcatcaggtgacccaggtgattctggccct
agaggtgatcctggccctccaggaccaaagggtgattctggcagacctggattcagctat
cctggaccaagaggaccaacgggtgacaggggtgaaaaaggttctcctggacccagggga
agcagaggagactgtgggccaaagggtgacccaggtctaaagggaactccaggagagccg
ggagaacctggcccagcaggagagcctggacagaggggtcctagaggagatggaggaaga
gatggtgatcctggaccagagggagatcctggccttactgaatgtgatgtcatgaactac
atcagagaaacctgtggatgctgtgattgtgaaaagagatgcggtgccctggatattgtg
tttgtgattgacagctctgagagtgtggggctgaccaacttcaccctggagaagaatttt
gtgatcaacaccattaacagactgggctcaatcgctaaagatcccagctctgaaacagga
actcgagttggtgtcgtccagtacagtcacaacggaacattccaggccattcgactcaac
gactccaagatcgactccatgtcagccttcaaagatgctgtgaagaagctagagtggatt
gctggaggaacgtggactccttcagccctgaagttcgcctacgataacctgattcgtgac
agccgtcggtcaaaagccaatgtgacggtggtcgtaatcacagatggtcggtatgatccc
cgggatgatgacaaactgctcaattacctctgcaccgacaccagcattgatgtcaacgct
attggtattggagatatgtttgaccagccggaggaaaacgaaagcttgaagtctatcgcc
tgtagaaaagatggaagagtcatgggaatgaggcgtttcgctgatctggtcgcagaagat
ttcatcgacaggattgagactgtgctttgtccggatcctgtggtcatttgccctgatctt
ccatgtaaaagtgagccagccgtggccaactgcatccagcggcctgttgatctggtcttc
atgctggacggctcagagcgtatgggccaggagaatttccgctatgcacgtgaattcgtg
gagaatgtggccaaccgtctcacactagctcagggagatgatgatgaacgcaatgcaagg
gtggctctcctgcaatatggagatgaaaaccaacatcagttggccttcaaactaacaaat
aacttcaccgtcatcgctgatggcctggccaacatgaggtacctagattcaacctccaat
gttggaagtggcatcatctacgccatcaacaatatcgtcacaagcagaggcactcgattg
gcaagacgaaatgcagagttgtcgtttgtcttcattaccgatggggtcaccagtaacaaa
aacctggaagaggggattagtgccatgcgcagagccgagggcgttcccactgtcattgcc
atgagcaatgatgttgacaaggaaatccttgcaaagatttccctgggagaccagacggcc
gttttcaggggtgaagattttgcccgtctgaacaaagccagcttttttgagcgattcgtt
cggtggatctgctga
DBGET
integrated database retrieval system
