Danio rerio (zebrafish): 767713
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Entry
767713 CDS
T01004
Symbol
tsen2
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dre03016
]
767713 (tsen2)
Enzymes [BR:
dre01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
767713 (tsen2)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
767713 (tsen2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
YccV-like
DUF4080
Motif
Other DBs
NCBI-GeneID:
767713
NCBI-ProteinID:
NP_001070119
ZFIN:
ZDB-GENE-060929-918
Ensembl:
ENSDARG00000091851
UniProt:
Q08BW3
LinkDB
All DBs
Position
11:complement(604268..617210)
Genome browser
AA seq
438 aa
AA seq
DB search
MTDAVFQAPKRRARVYECFEAALPVPLNSADDGDHTLLCRAEIIGHHVSVTDPAHIQQLY
HRGYFGKGVFSRSRPEHMISPQWKYVGDRCLPVISLSEYQKRLSLARAALVMQDLEEESV
NKALQILTEPVEFNTEEQQEPISKSNCDESLMDQTMDTDLIPDQTESAKPQRQGNPLYDP
LAEIYPEKLDQSLKADEKCRDHNDWISQCGCRANEERMNRTMHKSQTYEYVLVEESEDER
SQHITQENSSTDQPAELVCRINPFPMLEYLQLSYEEAFFLVYALGCLSIYYNGEALSVAQ
LWTMFRSLQPNFCFSYAAYHYYRSKGWVPKSGVKYGTDLMLYRKGPPFYHASYSVVVDTV
DASFRRSSLRPFSWRSLATLSRTTGNVSKELMLCFIITPSDVTGDLLVSPQCLKRFSVQE
VLMSRWVSSKERTEQEEI
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgctgtgtttcaggcgcctaagcgacgggcgagggtttatgagtgttttgaa
gcggctcttcctgtcccgctgaacagcgcagatgatggagatcatacactcctatgcaga
gcagagattatcggtcatcatgtgtccgtcacagaccctgctcatatacaacagctgtac
cacaggggttactttggtaaaggggttttctccagatccagacctgagcatatgatctct
ccacagtggaaatatgttggtgacagatgtctacctgtgatttccttatcagagtaccag
aagcggctcagcttggctcgtgcagctctggtgatgcaggatctggaggaggaatcagtc
aataatgcactgcagatcctcaccgaacccgtggagtttaacactgaagaacagcaagag
ccaatatcaaaatccaactgtgatgagtcactaatggaccaaaccatggacactgattta
atcccggatcagactgagtctgcaaagcctcagcggcagggaaacccactgtatgatcct
ctggctgaaatatgtcccgagaaactggaccagagtttaaaagccgatgagaaatgcaga
gatcacaatgactggatctctcagtgtggctgcagagcgaatgaggagcgaatgaacaga
accatgcacaaatctcaaacctatgaatatgtcctggtggaggagtctgaagatgagcgc
agtcagcacattacccaggagaacagctctactgatcagccggctgagctggtgtgcaga
atcaacccgttccccatgctggagtacctgcagctcagttatgaagaggctttttttctg
gtctatgctcttggatgcttgtccatttattataatggggaggctctgtccgtcgctcag
ctgtggacgatgtttcgctcgctgcagccaaacttctgcttctcctacgcggcgtatcat
tattaccgcagtaaaggctgggtgccgaagtctggagttaaatacggcaccgacttaatg
ctctacagaaaaggaccgccgttttatcatgcaagttattcagtggttgtggatacagta
gacgcgtctttcagaagatcatctctgcgtcccttcagctggagatctctggccactctc
agcagaaccactggaaacgtctccaaggaactgatgctctgcttcatcatcactccatca
gatgtgactggagatctgctggtttctcctcagtgtctcaaacgcttctcagtgcaggag
gtgctgatgagcagatgggtttcctccaaagagcgaaccgagcaggaggaaatataa
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