Desulfohalobium retbaense: Dret_0292
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Entry
Dret_0292 CDS
T00989
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
drt
Desulfohalobium retbaense
Pathway
drt03410
Base excision repair
drt03430
Mismatch repair
drt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dret_0292
03430 Mismatch repair
Dret_0292
03440 Homologous recombination
Dret_0292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drt03400
]
Dret_0292
DNA repair and recombination proteins [BR:
drt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Dret_0292
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Dret_0292
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dret_0292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ACV67594
UniProt:
C8WZW9
LinkDB
All DBs
Position
complement(361500..363233)
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AA seq
577 aa
AA seq
DB search
MPNTQWIFREQPASEKTAEFSTWAKQLEISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLA
PPHTWSGLNEAAAVLAAALEQDTGPLAVWGDYDVDGITATALVTEILRGRGYAVLPHLPN
RMEDGYGLNTAGIEALYDQGVRALLTVDCGMGDLEAITRAKELGMRVVVSDHHQPHATLP
PADAIVNPCVDACPCPELAGVGTAFFLMAALNRLLPGTPSDLRPSLDLVALGTIADVVSL
RGQNRIVAKNGLLLLSEGSRPGIYALKEASRLPGKAPIGAGQVAFGLAPRINAAGRMGSA
TEALDLLLAPDLATAQPLAAKLEAANQERRTCEDGILEQAVTQVEERGVTEGLVLADAQW
HQGIIGIVASRVVERFYRPTILLTRHNGYWKGSGRSIVDVDLHAALTECADLLAGFGGHP
QAAGLSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLDGHIPFGQIDLDLIREIELLQP
FGMGNPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGIVLTGKAWRQAEALTPSIQGET
VQLAFTPRLNHYQGLTSIDLDIKDWRLPHDREAANSN
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacacccaatggattttccgagaacagcccgctagcgaaaaaactgcagagttc
agcacctgggccaagcagctcgagatatcgccgtttctctgcgatctcctctggcaacgc
ggcctgtcgagtccgcaggaaatggacgttttcctcagtccgggactgcgccatctggca
ccgccacacacgtggtccggcctgaacgaggcggccgcggtgctggctgctgccttggaa
caggacacaggaccattggccgtctggggcgattacgacgtggacggcattaccgctacg
gccctggtcacggagatcctgcgcggacgcggctatgcagtccttccccatctcccgaac
cgcatggaggacggctacggactgaacacggctgggatcgaagctctctatgaccagggt
gtccgagcccttttgaccgtggactgcggcatgggcgacctggaggccatcaccagagcc
aaggaattggggatgcgcgtcgtggtttccgaccaccaccagccccatgccactctgccg
cccgccgatgccatcgtgaacccctgtgtcgacgcatgcccctgtccggagcttgccggg
gtgggcaccgcgtttttcctcatggccgcgctcaaccggctgctgccggggacgccgtcc
gacctgcggccctcacttgacctcgtcgccctgggaaccattgccgacgtggtcagcctc
aggggccaaaaccgaattgtggccaaaaacggcctgttactcctcagcgaaggatcccgt
ccggggatctacgccttgaaagaagccagcaggctgcccggcaaggccccgatcggtgcc
gggcaggtcgccttcgggctcgccccgcggattaacgcggccgggcggatgggctcggct
acagaggcccttgatcttctcctggctccggatttggccaccgcccaacccctggccgcc
aaactcgaggccgccaatcaggaacggcgaacctgtgaagacggcatcctggagcaggct
gtgacccaggtggaggagcgcggtgtcaccgagggcctggtcctggctgacgcgcagtgg
caccaaggcatcatcggtatcgtggcctcgagggtcgtggaacggttttatcggccgacg
atcctcttgacccgccacaacgggtattggaaaggatcgggccggagcatcgtggatgtg
gatctccacgccgcgctgaccgaatgcgcggatctgctggccgggttcggtggccatccc
caggctgcaggactcagcctgaccgaggccaatctgaagccctttacgcaacggttttcc
caggctattagcaaacaactcggcggagcggagccgctgccccggctcaaactggacggg
cacattccctttgggcaaattgatcttgacctgattcgggagatcgaactcttgcaaccc
ttcggcatgggcaacccccagcccgtcttctgctcagaaccgctccaggtccaaaaacac
aacgtcttcggcaaaaagcatgtcagcttgcaattgcaggacccgaaatcaggcatcgtc
ctgaccggcaaagcgtggcgccaggccgaggccctgaccccctcaatccagggagaaacg
gttcaactggccttcaccccacgcctgaaccattatcaggggctgacgtccatcgacctg
gacatcaaggactggcggctcccccatgatagggaggctgcaaattcaaattga
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