Diprion similis: 124404556
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Entry
124404556 CDS
T08947
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dsm
Diprion similis
Pathway
dsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124404556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsm03019
]
124404556
Messenger RNA biogenesis [BR:
dsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124404556
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124404556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124404556
NCBI-ProteinID:
XP_046734737
LinkDB
All DBs
Position
3:5456059..5467577
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSHVNFSTG
EQPEPNAKDYYQAQLLTQECTNLLSKPSFISNLCYAIDRPLHQQKSLNPSPKFFLNLRKV
LKLTSVQEVAFAIALLHSENPDIQTLALEHVKKQLPELIKNYINSEISNKHHEGGLHDSS
PEVLHLILSQAFQEPNQFGLPIEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEIPQTA
IELNMASNPMGFPFQDGNALVEMIMELGYGFTSSVDECRSALAGLGAREITPTAAARVLS
LMARTCSGLDDAGGLQSFWGGSSGNQDSSKEKSSDGNTPTTWNVEVFIQTLKDLQSTLSW
NEIIVKLDHADFIIKDRQGLNLLITGLRLGLQHLGYPLDMFPVELFYRHWDNVEGQFSLV
QQVLKNPDIFCFADYPYHSVTVDVLKAAPEGDSKEAGTWRSLNVVELLLHMAERGLYGAV
QEIFKWPIQHCPDVLVLALLQINPPITILRQELLSTLMPIFLGNHPNSAVILHHAWHANN
VTIKPIIMHAMADWYLRGEYDQTRLSRILDVAQDLKALSMLLNAQSFPFVIDLACLASRR
EYLKLEKWLTDKIRDHGELFVAACVKFLQRRCPHVMGPAIKEDPSTPKATQLPQETLNTI
LACLQVCAGSVSQECSDAIMTMVQNCNLMLSKASLSRPPPVIRHRGLETFNPATLGGQLF
SSSQVDPLGNLSSSLASMGLSSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFP
LMPISAQLHAGPVGTQGPSVVPGGTTIGGLSRLGPPSGIEKARLPETSNLFPDMSQNVSK
EIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKKFQDSGSKREREVFNCMLRNLFEEYRFF
PQYPDKELHITAQLFGGIIERGLVNTYVALGLALRCVLDALRKPEASKMYYFGIAALDRF
KSRLKEYQKYCEHVRAIQHFSEFPPHLIEYVEYGLQGQEPPTRPQGQVLPKSIAAMLAPA
TIPYKTITTTTVTTTTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITAPPES
LQDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLD
CLKVPDVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNNPIFHID
IDLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPD
LKLNLKFEIEVLCKNLSIDVSELKPAIYLKDPEKLRNLEYQLSHPNKKPEVAANPQPPQP
PAEELVRPTTTGTIVSQQAPPVNTTPSLPTSPPEPRFNYMDISVTGIASQHITINNQLPL
FQAHPQLKQFVRSAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEIRMRTAAR
HMVRNLTAGMAMITCREQVLTSISTNLKQSFVAALMGTTPQQKELAEQAASIVAADNMEL
ACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGG
VTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPVTEPAATAFAANPAVAVATPQQVAA
YAAAVNNDEVGAMLEKLATEVDLLLAAMGPGVPPPQHAALHALLDSIILTRRSRDTGAAL
ALLKKAVEGLLDGPTISTGVNDGEIMLRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLT
ECREEFRYNFEAVDYLIRSHLLNLPQFDYALAQAMDAGAAMATAFAMQLVQLYLIDERLT
THVTESDLFHTIEILARMAHHRAPPEGISLFRLTSLIESLRANHDPAVLADRAPAGPTAH
IHSGILQVRTRDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRALGEPNAAPSVVRAKCFHTLDAFVRLVALLVKHSGDT
ANTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFVMLFLELCAPEPVLEAVNY
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLSNFASMIQPLSFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGMRYNIQLMNALVLYVGTQAIVFIRHKGHTPNMSTIAHAAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYNFWKHEFVHCAPEIEKLFESVARSCMVQKQVQPPPEP
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcaaatttg
aacaagaaaaattttcgagaaagcgctcaggagatatcagttttggtgcagtggaagggt
ctggaggcggacagacacttgctgcgctgtttgttctcgcatgtcaacttttcaacggga
gagcagccagagcccaacgcaaaagactattatcaagctcagttgctcacccaagagtgc
actaatcttctcagcaaaccatccttcatatcaaacctctgttacgccattgatcgcccc
ttacatcagcaaaaaagcttaaatccgtcaccaaaattttttctgaatcttcgcaaggtt
ctgaaattgacgtctgtacaagaagttgccttcgcgatagcattgttgcattctgaaaat
ccagatatccagactttagcattggaacacgttaaaaaacagctgcctgaattgataaaa
aattacataaactcggaaataagcaataaacaccacgaaggaggtctgcacgattcgtca
cctgaggtcttacatctcatactgtcgcaggcatttcaggaacccaaccagtttggcctg
cctatcgaagcgaaggaaaaatttctcaagaatttaaggcgtgattttccccgtgagctg
gtaccggtggtgctagcaccactcttgtatccaggcgacggggaaattccgcaaacagca
atagaattaaacatggcttccaatccgatgggatttccctttcaggatggaaatgctttg
gtggagatgattatggaacttggatatgggttcacgagtagcgttgatgaatgccgttct
gcccttgctgggctgggggcccgagaaattacaccgaccgcagctgctcgggtcctatcc
ctcatggcccgtacatgttccggtcttgatgatgctggtggtttacaatcattctgggga
ggttccagtggtaatcaagattccagtaaagaaaaatcttctgacggcaatacacctact
acatggaacgtcgaagtcttcattcagactctaaaagatcttcaatccactttgtcgtgg
aatgagatcatagttaaacttgaccatgctgattttataatcaaggacagacaaggcttg
aacctgctgataacaggtctgcgtctaggtcttcagcatctaggatatcctctggatatg
ttccctgttgagttattttaccgacattgggataatgtagagggtcaattctcattggtg
cagcaagttttgaaaaacccggacatattttgtttcgctgattacccataccattcggta
accgttgatgttctcaaagctgcaccagaaggtgacagcaaagaagccggaacttggcga
tcattgaatgtagtggaacttctacttcacatggctgaacgaggtctatatggtgcagtt
caggaaatattcaaatggcccatccaacattgtccggatgttctcgtcctggctctacta
cagatcaatcccccaattacgatactccggcaggagttgctcagcactttgatgccgatt
ttccttgggaatcatccgaattctgcagtcattttacaccatgcttggcatgccaacaat
gttacaatcaagccgataataatgcacgctatggccgattggtatttacgtggggaatat
gatcaaacgaggctgtcacgaatcctagatgtggctcaggatttaaaggctctttcaatg
cttctgaacgcccaatcttttccttttgttatcgatttagcctgtttagcctcgcgaaga
gaatatctaaaactggaaaagtggcttacagataaaattagagatcatggagaattgttt
gttgctgcttgtgtaaaattcctacaacgaagatgtccacatgttatggggcctgctata
aaagaagatccgtcaactccgaaggctactcaacttcctcaggaaacactcaataccatt
cttgcttgcctgcaagtctgcgctggaagcgtgtctcaagagtgttctgatgcaattatg
acaatggttcagaactgtaatctaatgcttagtaaagcaagcctaagcagaccacctcct
gtcattagacacagagggctcgaaacattcaatcctgctactttgggaggacagctcttt
tcttcatcgcaagttgatccattgggaaatctcagctcaagtttagcttctatgggctta
agctctagtttgggacctcctagcagttctgctttcaatcttcctggggcccttggtcct
ttggtttctgcacctggttcgccctcacgtttaatgggtccgtcacccagcccatttcca
ttgatgccaatttccgcccagcttcacgcagggcctgttggaacgcaaggaccatcagtt
gtaccaggtggcacaacgataggaggattaagtcgtcttggtccaccaagtggtattgaa
aaggctagattgccagaaacttcgaacttgtttcctgatatgtcacaaaatgtgtctaaa
gaaatcgaagacgaagcgaacagctattttcaacgcatatacaatcaccctccacatccc
acattgtcgattgacgaagtgcttgaaatgttgaaaaaatttcaagattccggtagcaaa
agggagcgtgaggtgttcaactgcatgttgcgcaatttgtttgaagagtaccgtttcttt
ccgcaatatcctgataaggaattgcacataacagctcaattgtttggaggtatcattgag
agaggacttgtcaacacttatgtcgccttgggtttggcgctacgctgtgttcttgatgct
ttgaggaaacctgaggccagtaaaatgtattactttggaattgccgcgttggaccgtttc
aaaagtcggctaaaagagtatcaaaagtattgcgaacatgtcagggctattcaacacttt
agtgaattcccgccacatcttatcgagtatgtcgaatatggtctccagggacaagaacct
cccaccagacctcagggtcaagtacttccaaagtcaatagctgccatgctagcaccggct
actattccttacaaaactatcactacaacaactgttacaacaacgactacccaagccaag
ccatccacgactcccactacgtcgctctctgccaggccatcaattgcaaatgcaaccaac
atagacacattgcttgttgctacggataaggaggagaagattacagcaccaccggaaagt
ttgcaagacaagactgcattcatcttcaataatctgagtcagcttaatctgcaacagaaa
tgcgatgaaatccgggagatagttaccgaagaatactggccatggatggctcagtattta
gttatgaaacgtgccagcattgaattgaatttccacgccctttattccaactttcttgac
tgtcttaaggtacctgatgtcaataaaatggtcactagagaaactttcagaaacatcaag
gtattgctccgaagtgacaaaggaatagcgaatttttctgaccgttctctattgaagaac
ttgggtcattggctggggatgctgacattaggaagaaacaatccaattttccatattgat
atagatttgaaaagcttactcgtcgaggcgtatcacaaaggtcaacaagaacttttgtat
gttgtgccattcgtagctaaagtattggaaagctgtgcaaaaagccgtgtctttcgtcca
cccaatccctggactatggcaataatgaatgttttggctgagctacatcaggagcctgat
ctaaaactgaatctgaaatttgaaattgaggtgctctgcaagaacctgagtattgatgta
tccgaattgaagccagccatctatttaaaagatcccgaaaaactgagaaacttggaatac
caattatcccaccctaacaagaaaccagaagtcgctgctaatccgcagccgccacagcct
cctgctgaggaacttgtcaggccaacaactactggaactatagtctcacaacaggcaccc
cctgtaaatacaacaccttcattgccaaccagtccgcccgaaccacgcttcaattacatg
gatatatccgtgactggtattgcttcacagcacatcactatcaacaaccagctaccactt
ttccaagcacacccgcaactcaaacaatttgtgcgatccgccgttgaacgagctatccaa
gagtggattcaccctgtcgtagatagatcaataaaaatagcattgacgacaagtgaacaa
attgtcagaaaagattttgcacttgacccagaagagatcaggatgcgtactgctgctcgt
catatggtgcgcaatctcactgctggaatggccatgataacgtgccgagaacaggtactc
acttcaatcagtacaaacctgaagcaatcatttgttgctgcactgatgggaactactcca
caacaaaaggagctagctgaacaagcagcgagtatagtggctgctgataacatggaactt
gcgtgcgcatttgtacagaaaacagcgattgaaaaagctattcctgagatggataagcga
ctactaaatgaaatagaactacgtaagattgctagacaagaaggacggagatactgtgat
cccttagctaaatatcaggcagagagaatgcctgagcaaataagacttaaagtcggaggt
gtgactccgcaacaaatggctgtttatgaggaattcgcaaggaacattccagggtttcta
cctctttccgaacgtgacactcaagctctctttatgcctaagccggtaactgaacctgct
gccacagcatttgcggcaaatccagcagttgcagttgctacacctcagcaagttgcagca
tatgcagctgccgtcaacaatgacgaagttggtgccatgttagaaaaacttgccacagaa
gtagatctacttttggcagctatgggtccaggtgttccgccaccacaacacgccgcacta
catgcacttctcgattctatcatacttaccagaagatccagggacactggtgctgctttg
gcactattgaaaaaggctgtagaaggattgctagatggtcccaccatttcaactggtgtt
aatgacggagaaataatgctgagatacagggaattacatcttcgtatccttaagtgcctt
caagatccacgagcttatggtatgcagtggacaaacaaacacgtaactcgatgtttaacg
gaatgcagggaagagtttcgctacaatttcgaagctgtcgattatctgataagatctcac
ttgttgaacctaccgcaatttgattatgctttggcccaggcaatggatgcgggtgctgcc
atggctactgcgtttgctatgcaactagtgcagctctacctaattgatgagagactaact
actcatgttacggaatctgacttattccatacaattgaaattctagctagaatggcacat
catcgagcaccacctgaagggatttcattattcaggcttactagtttgatagaatcatta
cgggctaatcatgatccagctgtactggcagacagagccccagctggaccaactgcccat
attcactctgggattctccaggtgagaactcgagatttcgacgatcctcctggactgatg
gaaaagaccgaatacttgttacgtgaatgggtatccatgcaccacaatccaacgcacgcc
cgtgacccaacaaaggcattcggaatgtttgtccaccagatgaatattcacggaatatta
aaaaccgacgatctcataacgcgattcttcaagctgagtacacaaatgtgcgtcgatctc
tgctacagagcattgggtgaaccaaatgctgctccttctgtggtgcgtgcgaagtgcttc
catacattggatgcctttgttcgtcttgttgcacttttggtgaagcattcaggggacact
gcaaatacccacactaaaatcaacctcctgaacaaagttttgggcatcgtcgctggtgtt
cttttgcaagatcatgaaatgcgaggaacggactttcaacagctaccttatcatcgaata
tttgttatgctattccttgagctgtgtgctcccgaacctgtacttgaggccgttaattac
caagtactgaccgctttctgccacaccctgcacatattacgtccagcaaaggcctcgggc
ttttgttacgcctggttagagctcgtttcgcaccgagtatttatcggccgtatgctcgct
attactccccaacaaaaatgctggggcatgtacgctcagttactcattgatctcttcaag
tatctcgcaccatatctgcgcaatgccgagctagcaaagccagtaactctcttatacaag
ggaacgctgcgggtattgttggtcttactacatgacttcccagaatttttatgcgactat
cattacggattctgtgatgtgatacccccaaattgtattcaaatgagaaatctcattctg
agtgcttttccgagaaatatgcgcctccccgatccttttaccccgaatttgaaagtcgac
atgctgcaagaaatcgctcatgcgccaagagttctatcgaactttgcctctatgatccaa
ccgcttagtttcaaaaaagaattggattcatacttgaaagcaagagcacctgttactttc
ctctcagaacttcgcagtaacttgcaggtttcacaggaggctggaatgcgctacaatatt
caattgatgaatgcccttgttctgtatgtcgggacacaggccatagtattcattcgtcac
aaaggacacactcccaacatgtcaacgattgctcatgccgcacacatggatatattccaa
aatctggctgttgatcttgacacggaagggcgctacttattcctaaatgcaattgcaaat
cagttgcgatatcccaacagtcatacgcattacttcagttgtaccttgttgtacctattc
gccgaagctaacactgaagctattcaagaacaaataacaagagtccttcttgaaaggctg
attgtcaacagaccacatccctggggacttctcattacttttatcgaactcattaaaaat
cctacctacaacttctggaagcatgagtttgtccactgtgcaccagaaatcgaaaaatta
ttcgaatcagtggctcggtcatgtatggtacagaaacaagtccagccacctccagaaccg
gagatcccagagtga
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integrated database retrieval system
