Dyadobacter sandarakinus: HWI92_20730
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Entry
HWI92_20730 CDS
T07768
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dsn
Dyadobacter sandarakinus
Pathway
dsn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HWI92_20730 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsn03021
]
HWI92_20730 (rpoB)
03400 DNA repair and recombination proteins [BR:
dsn03400
]
HWI92_20730 (rpoB)
Enzymes [BR:
dsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HWI92_20730 (rpoB)
Transcription machinery [BR:
dsn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HWI92_20730 (rpoB)
DNA repair and recombination proteins [BR:
dsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HWI92_20730 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QRR03163
UniProt:
A0ABX7IBR5
LinkDB
All DBs
Position
5025171..5029037
Genome browser
AA seq
1288 aa
AA seq
DB search
MATIKATTERKNFSRINQIIDYPDLLGIQVQSFRDFFSLDTSVEDRSGEGLYKVFAENFP
IADSRDNFVLEFIDYLLEPPKYSVDESIDRGLTYAVPLKAKLRLICNDADHEEFETIEQE
VFLGNIPYMTERGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGSKLYSARIIPFKGSWI
EFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEISATPANLKKAVGR
RLAARVLRTWTEDFVDEDTGEVVSIQRNEVLLERDSTISPEDIEVIVESGQKSIILHKED
MNVADYNIIYNTLQKDSSNSDKEAVEQIYRQLRNAEAPDEQTARDVIQSLFFSDKRYDLG
DVGRYRINKKLGSDTSLDVRVLTTGDIVSIVKYLIGLINAKAVVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQT
NPLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVF
AKVNGMGFIETPYRVIDGSGKLTDELIYMTAEEEDSKYIAQANASVDKEGNFTVEKIKTR
FEGDFPMVDPSQASYMDVAANQIVSVAASLIPFLEHDDANRALMGSNMQRQGVPLLRPQA
PIVGTGLERRVAMDSRALVVAEGDGEIEYVDSKKIVVKYDRTDEDRLVSFIDDSVSYSLV
KFRRTNQDTCLNLQPMVLKGQKVKKGEPLCQGYGTEGGELALGRNLLVAFMPWQGYNFED
AIVISEKVVREDIFTSIHIEEFELEVRDTKRGEEELTAEIPNVSEETVKNLDENGIVQIG
TEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSMKGVVIDTKLF
SRPTKEERAKHKDELRLLMKKYGRDLTALRGRVIDKLVQLTDNKTSQGVKHKFGDELISK
GMKFNVRNISENLFPANNPYRDESQYAVPEEANLIGDVLTDSWTEDADTNRQVSLVLKNY
LNARSEIMGRFKRDRFALEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVAR
IVRDEDMPFLEDGTPVNIVLNPLGVPSRMNIGQIYETILAWAGLKLGRRYATPIFDGATE
AEVAAELKEAGLPDWGRTYLYNGLTGEQFDQPVTVGLMYMMKLGHLVDDKMHARSIGPYS
LITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQEILTVKSDDVVGRAKAYEAIVKGE
NLPKPNIPESFNVLVHELRGLALEITLD
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaattaaagcaacaacagaaaggaagaatttctcccggatcaatcagattatt
gattatcctgacttgttgggcatccaggtacaatcgttccgggatttcttcagtctggat
acttcagtagaggatcgctcaggagaaggtttgtacaaagtatttgcagagaattttccg
attgcggattctcgcgacaacttcgtactagaatttattgactacttactggagccgccc
aagtactccgttgatgagtccatcgacagaggtttgacttacgcggttcccttaaaagca
aagttgcgccttatttgcaatgatgctgatcacgaggaatttgagacaattgaacaggag
gtattccttggaaacattccgtacatgacggagcgtggatcattcgtgatcaatggcgct
gagcgtgtaattgtgtcgcagcttcaccgttctccgggtgtgttcttctcgatgagcaag
cacaccaatggatccaaattgtattcagcacgtattatccctttcaaaggctcatggatt
gagttttcaacggatgtcaataacgtgatgtatgcttatatcgatcgtaagaagaagttt
ccggttacaacgctgctgcgggcaatcggctttggatctgataaggatattctggatctt
tttggtctttccgaagaaattagtgcaacgcctgcaaaccttaaaaaggcagtaggccgc
aggctggcagcaagggtgctgcggacctggactgaggacttcgtggatgaagatactggt
gaagtagtttccatccagcgcaatgaagtactgcttgaacgtgactcgaccatttcacct
gaggatattgaggtgattgtagaatccggtcagaagtccatcattcttcataaagaggat
atgaatgtggctgattataatattatttataatacgctgcaaaaagatagctcaaactcc
gacaaggaggccgttgagcagatataccgccagctgcgtaatgcagaggcacccgatgag
caaacagcccgggatgttattcagagcttgtttttctctgacaaacgttatgacctcggt
gatgtaggccggtaccggattaacaagaaattgggatcggataccagcctggacgttcgc
gtactgacaacaggcgacatcgtttctatcgttaaatacctgatcggtctgattaatgcc
aaagcagtagttgatgacattgaccacttgtcaaaccgccgtgtacgtaccgtaggcgag
cagttgtatgcacagttcggtgtaggtcttgctcgtatggcgcgtacgattaaggagcgt
atgaacgtacgggataacgaagatttcaaaccggttgatttgatcaatgcaagaacattg
tcatcggtaatcaactcgttcttcggtaccaaccagctttcgcagtttatggatcaaacg
aatccattggctgagattacgcacaaacgtcgtatgtcggcacttggaccaggtggtctt
tcacgtgaaagagcaggttttgaggtgcgtgacgttcactacactcactacgggcgtctg
tgtacaattgaaacacctgaaggtccgaacattggtctgatctcttcactttgcgtattt
gcgaaagtgaatggaatgggctttatcgagacgccttatcgcgtgatcgatgggtcaggt
aagctgacggatgagctcatctacatgacagcggaagaagaagattccaaatacatcgcg
caggccaatgcctctgttgataaagaaggaaactttaccgttgaaaaaatcaagacacgt
ttcgaaggtgacttcccaatggtggatccttcgcaggcgtcatacatggacgtagctgct
aaccagattgtatctgttgccgcttcgctgattccgttccttgaacacgatgatgcgaac
cgtgcattgatgggatctaacatgcagcgccagggtgtgcctttgttgcgccctcaggct
cctattgtaggtactggtctcgaaagacgtgttgccatggattcccgcgcactggttgtg
gcggaaggtgatggagaaatcgagtatgtggactccaaaaagattgtagtgaagtacgac
aggactgatgaagatcgtcttgtaagctttattgacgatagcgtgtcttacagccttgtt
aagttccgcagaaccaaccaggacacttgtcttaaccttcagccaatggtgttgaaaggg
cagaaagtgaaaaaaggagagccgctttgccagggatatggtactgagggcggtgaactt
gcactgggacgtaacctgcttgtagccttcatgccttggcagggttataacttcgaggat
gcgattgttatctccgagaaggttgtccgcgaggatatttttacttcgattcacattgaa
gaatttgagctggaagtacgtgataccaaacggggtgaagaagaattaaccgctgaaatt
ccgaacgtaagtgaggagacggttaaaaatctggatgaaaatggtatcgttcagattggt
actgaggtaaaagaaggtgatatcctgatcggtaagatcactccaaaaggagaatcagat
cctactccggaagaaaaattgcttcgtgctattttcggtgataaggctggtgatgtgaag
gatgcctccaaaaaagcaccaccatccatgaaaggtgtggttattgatacgaagcttttc
tcccgtcctacaaaagaagagcgtgcaaaacataaagacgagcttcggttactgatgaaa
aagtacggccgcgatcttactgcattgcgcggacgtgtcatcgacaaactggttcaactt
acagataataagaccagccagggagttaaacacaaatttggtgatgagctgatcagcaaa
ggaatgaagttcaatgtgagaaatatctccgagaaccttttccctgctaataacccatac
cgcgatgaaagccagtatgcagtgcccgaggaggctaacctcattggtgacgtactgacc
gactcctggaccgaagatgcggataccaatcgtcaggtttctctggtattgaaaaactac
ctgaatgcccgaagcgaaatcatgggccgcttcaaacgcgatcgtttcgcattggaagtt
ggtgacgaactacctgctggtatcgtgaaactggcgaaagtatatatcgctaagaaacgt
aaactgaaagttggggataaaatggcaggtcgtcacggtaacaaaggggttgttgcccgt
atcgttcgtgacgaagatatgccatttctcgaagacggaacgccggtaaacatcgtgttg
aacccgcttggggtaccttcacgtatgaacatcggtcaaatttatgaaaccatccttgca
tgggctggtctgaaactcggccgccgctacgcaacaccgatctttgacggtgctaccgaa
gcagaagttgctgctgagctgaaagaagcaggtctgccggattggggacgtacttatctg
tacaatggtctgactggtgagcaatttgaccagccggtaacagtcggtctgatgtacatg
atgaaattgggccacttggttgacgataaaatgcacgcgcgttctatcgggccatactcg
ctcatcactcagcaaccattgggtggtaaagcgcagttcggtggacagcgtttcggtgaa
atggaagtgtgggcgctggaagcgttcggtgcatcgcacattcttcaggaaatccttact
gtgaaatccgatgatgtggtaggccgtgccaaagcctatgaagcgatcgtgaaaggtgaa
aaccttccgaaaccaaatatcccagagtcattcaacgtacttgtccacgagcttcgcgga
ctagcattggagattacactggactaa
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