Dickeya solani IPO 2222: A4U42_12315
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Entry
A4U42_12315 CDS
T04410
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dso
Dickeya solani IPO 2222
Pathway
dso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4U42_12315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dso03019
]
A4U42_12315
03009 Ribosome biogenesis [BR:
dso03009
]
A4U42_12315
Enzymes [BR:
dso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A4U42_12315
Messenger RNA biogenesis [BR:
dso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4U42_12315
Ribosome biogenesis [BR:
dso03009
]
Prokaryotic type
rRNA helicases
A4U42_12315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANE76049
LinkDB
All DBs
Position
2853597..2855492
Genome browser
AA seq
631 aa
AA seq
DB search
MAEFETSFASLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALEHSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRALLSKLQPQQEELDIE
TLAAALLKMAQGERPLILPPEPVVERRPRREFRERDERFERRGDRNDRGDRNDRGPRSDE
RPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGDLLSHFTRTRILNKPMNMQLMGEAQPHERRERREGGERGDRGARGFSERPAGNG
RGRPFNGERREGGERRGSRDGQRAPRRASNA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtttgaaacctcttttgctagtttggggctgtccgctcctattctgaatgca
ctgtctgatatggggtacgaaaagccatccccgattcaggcggaatgtattcctcatctg
ctcaacgggcgcgacgtactgggtatggcgcagaccgggagcggcaagaccgcggcattt
tccctgccgctgctgaacaatatcaaggctgaactgaaagcgccgcagttgctggtgctg
gcaccgacccgtgagctggcggtgcaggttgcggaagcctgtaacgaattttctaaacat
atgcagggcgtcaatgtagtggccctgtacggcggccagcgttatgacgtgcagctgcgc
gcgctgcgtcagggaccgcaaatcgtggtcggtaccccagggcgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagcggtctggtactggacgaagctgacgaa
atgctgcgcatgggcttcattgaagatgtggaaaacatcatggcgcagatcccggctgaa
catcagacggcgctgttctccgccaccatgccggaagcgattcgtcgtatcacccgtcgt
ttcatgaacgatccgcaggaagtccgcattcagtctagcgtgacgactcgtccggatatc
agccagagctactggacggtatacggcatgcgtaagaatgaagcactgatccgtttcctg
gaagctgaagattttgatgccgcgatcattttcgtgcgtaccaagaatgccacgctggaa
gtggccgaagcgctggagcacagcggttacaacagcgctgcgctgaacggcgacatgaat
caggcgctgcgtgaacaaacgctggaacgtctgaaagacggtcgtctggatatcctgatc
gcgaccgacgttgccgcgcgtggtctggatgttgagcgtatcagcctggtagtgaactac
gatatcccgatggattccgagtcctacgtacaccgtatcggccgtaccggtcgtgcaggt
cgtgccggacgtgcgctgctgttcgtggaaaaccgcgagcgccgcctgctgcgcaacatt
gagcgcaccatgaagctgacgattccggaagtggatctgccgaacgccgaactgctgggg
cagcgccgtctggcgcagtttgccgccaaagtacagcagcagctggaaagcagcgatctg
gacatgtaccgtgcactgctcagcaagctgcagccgcagcaagaagagctggacatcgaa
acgctggctgctgcgctgctgaaaatggcgcagggcgaacgtccgctgattctgccgccg
gagccggtggttgaacgtcgtccgcgccgtgagttccgcgaacgcgatgagcgctttgag
cgtcgtggtgatcgtaacgatcgtggcgaccgtaacgatcgtggtcctcgtagcgatgag
cgtccagcccgtcgtgagcgtcgtgatgttggcgaaatggatctgtatcggatcgaagtg
ggtcgtgacgatggcgtggaagtgcgtcatatcgtgggcgcgattgctaacgaaggcgac
atcagcagtcgttacatcggcaacattaaactgtttgcctcacactccaccattgagctg
ccgaaaggcatgccgggcgacctgctgtcgcacttcacccgtacgcgtattctgaacaag
ccaatgaatatgcaactgatgggtgaggcacagccgcatgaacgccgtgagcgtcgtgaa
ggcggtgagcgtggcgaccgtggtgcccgtgggtttagcgaacgccccgctggtaatggc
cgcggccgtccgttcaatggcgaacgtcgtgaaggtggcgaacgtcgcggcagccgtgac
ggtcagcgcgcgccgcgccgtgccagcaatgcctga
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