Dipodomys spectabilis (banner-tailed kangaroo rat): 122095262
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Entry
122095262 CDS
T07891
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03008
Ribosome biogenesis in eukaryotes
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122095262 (Xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
122095262 (Xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122095262 (Xrn1)
03009 Ribosome biogenesis [BR:
dsp03009
]
122095262 (Xrn1)
03016 Transfer RNA biogenesis [BR:
dsp03016
]
122095262 (Xrn1)
03036 Chromosome and associated proteins [BR:
dsp03036
]
122095262 (Xrn1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122095262 (Xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
122095262 (Xrn1)
Ribosome biogenesis [BR:
dsp03009
]
Eukaryotic type
Pre-60S particles
RNases
122095262 (Xrn1)
Transfer RNA biogenesis [BR:
dsp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122095262 (Xrn1)
Chromosome and associated proteins [BR:
dsp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122095262 (Xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
122095262
NCBI-ProteinID:
XP_042521639
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKIFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINENGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEAKNYKEKKKLKGQENSLCWAALDKNEGEVVASKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLAAQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISALKIHFELGKPFKPFEQLLAVLPAASKSLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRNQHSECLM
CWYDKDTEFTYFSPWPEKFPDIERCCTRYEIISLDAWHIDINKSKLTNVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDEPSIENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKVYLGRTPPPSKVVHLGDKEQSNWTKEVQGISDQ
YLRRKGIIINETSALVYAQLLTGRKYQVNQNGEVRLEKQWSKQVLPFVYQTLVKDIRAFD
SRFSSIKTLDDLFPMRSTVFMLGTPYYGCTGEVQDSGDVISEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEE
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGASREADILF
EVLFDEEFHGGLTIRCSPGRGYRLPTSALVNLSHGNRSETGNQKLTAIVKPQPAVTQCSS
NSSVSSGHLGGLNHSPQSLFVPTQVPAKDDDEFSNIWQSLQGSGKIQHFQPALQEKGTVL
PHEISQVTPQHKSSFNDNSVKYQQRKHDPHRKLKEECKSPKAECRSQKMSSKQTFGGPAK
CNNIKLLKRNESPGVTETQKPSSGMETFLASLSISKENDVQSSQHGEPPNEEHLSPQSFA
MKGTRMLKEILKIDGSDSVDRKNEPKQFGHEVAISSNRKDEYGLSSQAKQNKKLASYTNK
PHSTSEYQSVPSVDSMCWSGQIPPVSTPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQV
KLSNGLLVLGPQCHSENEAKEKAALFALQQLGSLGVNFPFPPPIFPNYPPAVPPGTIPPV
FPQPTGWDHYGSNLAFGAAGNMMPSSSHLLGSVPWRPPVPVPGRPFHPTSHSGTVPGAGG
VPGGIHNQFIPLQVTKKRVANKKNLENKEAQSSSQAASLPPSKPGSSEVTKATLQERSPA
SLKPSEAAQPVSSQVETAAQGPSMAHQKSSSSARRKSRKLAVNFGISKPSE
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccgctggatctcggagcggtacccttgcctcagcgaggtg
gtgaaagagcaccagattccagaatttgacaacttgtacctggatatgaacggaattata
catcagtgctcccatcctaatgatgatgatgttcacttcaggatttcagatgataaaatc
tttactgatattttccactacttggaagtgttgtttcgaattattaaacctagaaaaata
ttttttatggctgttgatggtgtggctccacgagcaaaaatgaatcagcagcgtgggagg
cgtttcaggtcagccaaggaggcagaagacaaaataaaaaaggccatcgaaaagggagaa
actcttcctacggaggccaggtttgattccaactgcattacaccagggactgaattcatg
gccaggttgcatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctatttctcaggccatgagactccaggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaaaccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgatcatgcttggattaacaagtcatgaagcacac
ttctctctcttacgagaagaggttcgatttggtggcaagaaaacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttgatgagagaatatattgactat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaagaattatagat
gattggattttgatgggatttctggttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactccctcttctttatggaacatacatcaccattctgccagaa
cttggaggttacattaatgaaaatgggcatctcaacttacctcggtttgagaaatactta
gtgaaactatcagactttgatcgagaacacttcagtgaagtttttgtggacctgaagtgg
ttcgaaagcaaagttggtaacaagtacctcaatgaagcagcaggcattgcagcagaagaa
gccaaaaactacaaggaaaagaaaaaattaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggtgaagtggtagcttctaaggataatttagaagatgaaact
gaagatgatgatctatttgaaactgaatttagacaatataaaagaacatattacatgaca
aagatgggagttgatgtagtatctgatgactttctggctgcccaagctgcatgttatgtt
caggcaatccagtggattttgcactactactaccacggagttcagtcatggagctggttt
tatccataccattacgcaccttttctatccgatatccgcaacatcagtgctctcaaaatc
cactttgaactgggaaaaccattcaagccatttgagcagctgcttgctgtacttccagca
gccagcaaaagtctacttcctacatgctaccagcacttgatgaccagcgaagactcacca
attatagaatattacccacctgattttaaaactgatctaaatggaaaacaacaggaatgg
gaagctgtggttttaataccttttattgatgagaagcggttattggaagctatggaagca
tgtaaccactccctcaagaaggaagagagaaaaagaaaccaacatagtgaatgtctaatg
tgttggtatgataaagacacagaattcacctatttctctccatggccagaaaagttccct
gacatagaacgatgttgtacgaggtatgaaatcatatctttagatgcttggcatatagac
ataaacaagagcaaattaaccaatgttgaccagaaggcgttatatttctgtggattccct
actctgaaacacatcaaacataaatttttcttgaagaaaagtggtgttcaggtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtgaatgcagaatcagatgaa
cctagtatagaaaatgtagcttcgtcagtgcttggaaagtctgtctttgttaattggcct
cacctcgaagaagctagagttgtggctgtatcagatggtgaaactaagttttacttggaa
gaacctccaggaacacagaaagtttatttgggaagaactcctccaccatctaaagttgtt
catcttggagataaagaacagtctaactggactaaagaagtacaaggcatttcagaccaa
tacctaagaagaaaaggaataataataaatgaaacatctgcccttgtgtatgctcagtta
cttacaggtcgtaaatatcaagtaaatcaaaatggtgaagttcgtctggaaaaacagtgg
tcaaagcaagttcttccttttgtttaccaaactcttgttaaggatattcgagctttcgac
tctcgtttctctagtatcaaaaccttggatgatttgtttcctatgagaagtacagtcttt
atgctaggaactccctactatggctgcactggggaagtccaggactcaggtgatgtgatt
tccgaaggtagaattcgagtggtcttcagcatcccgtgtgagcccaatcttgatgctcta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aaaaaaaatgaagaggtgcctggctataccaagaaagttgggagtgagtggatgtattca
tctgcagccgagcagcttcttgcggagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaagacgtattctatgaggatgatatttggcctggagaagaa
gagaatggtgctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttgtctcgttcttcttgtgatttacaaattctggatgccgctattgttgagaaaatt
gaggaggaaattgaaaagtgcaagcaaagaaagagtaataagaaggtgcgggtgacagtg
aagccccacttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagat
gcagaattccgtctctttgaccgtgttgtaaacgtgagagagaatttttcagtgccagtt
ggccttcgtgggactatcataggaatcaaaggggccagtagagaagctgatatactgttt
gaagtattatttgatgaagaatttcatggaggcctaacaataaggtgctcacctggtaga
ggttaccggctgccaacaagtgccttggtgaacctttctcatgggaatcgctctgaaact
ggaaaccagaagttgactgctatcgtgaaaccacagccagctgtgactcagtgcagctca
aattcatcagtttcatcggggcatttggggggcctcaaccattctcctcaatcacttttt
gttcctactcaagtacctgctaaagatgatgatgaattttctaacatttggcagtcctta
caaggatcgggaaaaattcagcacttccagccagctcttcaagagaagggtacagttcta
cctcacgaaataagtcaagtaactccacagcataaatctagctttaatgacaacagtgtc
aaatatcagcagagaaaacatgaccctcaccgcaaacttaaagaagagtgtaagagtcct
aaagctgaatgtcggtcacaaaaaatgtccagtaaacagacttttggaggccctgctaaa
tgtaataatatcaagctattgaagagaaatgaaagtccaggagtcacagaaacccaaaag
ccgagctctggaatggagacctttttagcatctttgagtatctctaaagaaaatgatgtg
cagtcatctcagcatggagagcctccgaacgaagagcacttatcaccacagtcctttgct
atgaagggaacacggatgctcaaagaaattttgaaaattgatggctcagacagtgtggac
cgtaaaaatgagccaaaacagtttggtcacgaggttgctatttcctctaatagaaaagat
gaatatggactatcttctcaggctaaacaaaataagaaattggcatcctacacaaacaag
cctcacagcactagtgagtaccaaagtgttccatctgtggacagtatgtgttggtctggc
cagatccctcctgtgtccacaccagtaactgaactttctcgaatttgttcccttgtggga
atgccacaaccagatttctcctttctgagaacacctcagacaatgacagtttgccaagta
aaattatctaacggcttactggtccttgggccacagtgccactctgaaaatgaagccaag
gagaaagctgcactctttgccttacaacagctgggctccctaggagtgaattttcctttt
cctccaccaatatttccaaattatcctcctgctgttccaccaggaaccattcctccagtt
tttccccaacctactggctgggatcactatggaagcaacttagcatttggggcagcaggt
aacatgatgccctcatcctctcatcttcttggctcagttccatggagaccgccagtgcca
gttcctgggaggcccttccaccccacatcacactccgggacggtgcccggggctggagga
gtaccaggcggcatacacaaccagttcatacctctgcaggtcactaaaaaaagagtagca
aacaaaaagaaccttgagaataaggaggcccagagctcttctcaagccgcctcccttcca
cctagcaagccaggctcctcggaggtcaccaaagcgactctgcaggaaaggtcacccgcc
tctctgaagccctctgaggctgcacagcctgtgtcttctcaagtggaaactgccgcccaa
ggccccagcatggctcaccaaaagtcaagctcttctgcacgaaggaagtcacggaaactg
gctgtcaattttggcatttctaaaccttctgaataa
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integrated database retrieval system
