Dipodomys spectabilis (banner-tailed kangaroo rat): 122102235
Help
Entry
122102235 CDS
T07891
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122102235 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122102235 (Cnot1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122102235 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122102235 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122102235
NCBI-ProteinID:
XP_042528779
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFGFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPTVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccaacaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgttgatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacacagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcaacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcacctcatctgtttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagttcagat
ctccgaggttttgctgcccaatttattaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctttttgggcagaagggagcatttggagttggacag
gaacagatagacgcttttcttaagactctgcgcagagattttccccaagaacgctgtcct
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagttctttggctgatttcatgcaa
gaagtaggctacggtttttgtgcaagtattgaagaatgtcggaatataatcatgcagttc
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagtatctctgctcctggcagtggaatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaacgtggaagtc
ttgattgatgttcttaaggaactgaacccgagtttgaatttcaaggaggtaacttacgaa
ctagatcatcctggatttcagattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgttccctgtagacttcatatatagaccttggaaa
catgcagaaggccagctctcctttattcaacattccctcataaatccagagatcttctgt
tttgctgactatccctgtcacactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgcttaggctt
gcagaagttgggcagtatgaacaagtcaaacaactctttggctttcctatcaaacactgt
ccagacatgctggtattggccttactccaaatcaacacttcttggcacactctacgtcat
gaactcatctccactctgatgccaatattccttggaaaccatcctaattctgccattatt
ttgcactatgcatggcatgggcagggccagtctccatcaatacgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggagcaatatgaccaggccaaattgtctcgaata
cttgatgtggcccaagacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaaatgg
ctcacagataaaataagagagcatggggaaccttttattcaagcatgcatgactttctta
aagagaagatgtccttctattttgggtggacttgccccagagaaagaccagcctaagagt
gctcaacttcctcctgaaactctggcgacaatgttggcttgtctacaggcttgtgcgggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgtagtaatgtt
atgaataaggccagacagccaccacctggagttatgccaaaaggacgacctcctagtgct
agtagcttagatgccatttctcctgttcagattgacccccttgctggaatggcatctctt
agtataggtggttcagctgctcctcacacccagagcatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcaatcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcttgactggtataggaactggggctcttggacttcctacagtgaat
aatgatcccttcgtacagagaaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttatctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaatagctattttcagcgaatatataatcatccacca
catccaaccatgtctgttgatgaagtattagaaatgctacagagatttaaagactcaact
ataaaaagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcgg
tttttcccccagtaccctgataaagagttacatataacagcttgcttgtttggtggcata
atagaaaaaggactagtcacttacatggcactgggtctggccctgagatatgtccttgaa
gccttacggaaaccttttggatccaaaatgtattattttgggattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgccagcacttggcttccatcagtcac
tttatgcagtttccgcatcatttgcaggagtatatcgagtatggacaacaatctagagat
ccacctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaagcccaggttccagccaaagctcctcttgctggtcaggttaacactatggta
accacctcaaccaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagacgtgccaccttccatcaatactacaaatatagatacattgcttgtg
gccacagatcaaactgagagaattgtggagcccccagaaaatattcaggagaaaattgct
tttatcttcaataatctctcacagtcaaatatgacacagaaggttgaagaactaaaagaa
accgtgaaggaagaatttatgccttgggtttcacagtatctggttatgaagagagtcagt
attgagccaaactttcacagcctatattcaaacttccttgatacactgaagaatcctgaa
tttaataagatggttctgaatgaaacctacagaaatatcaaagtgctcctaacctctgat
aaagctgcagccaatttttcagatcgttctttgctgaagaatttgggacattggctggga
atgatcacattagctaaaaataagcccatcttacatactgatttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacagcaagaattgctatatgtagtgccctttgttgcc
aaagtcttagagtccagcattcgtagtgtggtttttaggccaccaaacccctggacaatg
gccattatgaatgtattggcagagctacaccaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtgctctgcaagaaccttgcattagacatcaatgagctgaaacctgga
aacctattaaaagataaagatcgcctgaaaaatttagatgagcaactttctgctccaaag
aaagatgtcaagcagccagaagaactccctccaatcacaacaacaacaacttctacaaca
ccagctaccagcactacttgtacagccacagttccaccacagccacagtacagctaccat
gacatcaatgtctattcccttgcagggctggcaccacacattactctaaacccaacaatt
cccttgttccaggcccatccacagttgaaacagtgtgtgcgtcaagcaatcgaacgggct
gtccaggaactggttcatcctgtggtggatcggtcaattaagatcgccatgactacttgt
gagcaaatagtcaggaaagattttgccctggattcggaggaatctcgaatgcgaatagca
gcgcatcacatgatgcgtaacttgaccgctgggatggctatgattacttgcagggaacct
ttgctgatgagcatatctacaaacctaaaaaacagttttgcctcagctcttcggactgca
tccccacaacaaagagaaatgatggaccaagcagctgctcaattagctcaggacaattgt
gaattagcttgttgttttattcagaagactgcagtagaaaaagcaggcccagagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagggcgaagatac
tgtgatcctgttgtattaacataccaagctgagcggatgccagaacagatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagttcgcacgaaatgtgcct
ggcttcttgcctacaaatgacctaagtcagcctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcaaatttatgataagtgcattacagaactggag
cagcacttacatgctataccaccaactttggctatgaaccctcaagcccaggctcttcga
agtcttttggaagttgtagtgttatcacggaattctcgggatgctatagctgctcttgga
ttactccagaaggctgttgagggcttattagatgccacaagtggtgctgatgctgaccta
ctgctgcgttaccgagagtgccacctcttagtactcaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatacaatgtggaggcagtggagttgttaatacgaaatcatttggtaaacatgcaa
cagtatgaccttcacctagctcagtcaatggagaatggtctaaactacatggccgtggca
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctgtttcacaccattgaaactctcatgaggattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtagtacgatccaactatgaagcaatg
attgatcgtgctcacggaggccccaactttatgatgcattctgggatctctcaagcctca
gagtatgatgaccctccaggcctgagggagaaggcagagtatcttctaagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcatcagcaaggaatactgaagactgatgac
ctcataacaagattttttcgtttgtgcactgaaatgtgtgttgaaatcagttaccgtgct
caggctgagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgttat
cacaatctagatgcctttgtacgactcattgcactgttagtgaagcactcaggggaggct
accaatactgtcacaaagattaatctgctgaacaaggttcttggtatagtagtgggagtt
ctcctacaggaccatgatgttcgacaaagtgaatttcagcagcttccctaccatcgaatt
tttatcatgttgctcttggaactcaatgcacctgagcatgtgttagaaactattaatttc
caaacacttacagctttctgtaatacattccacattttgaggcctaccaaagctcctggc
tttgtatatgcctggcttgaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggctggcctatgtatgcgcagctactgattgacttattcaaa
tatttagcaccttttcttagaaatgtggagctcaccaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctggttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatcccacccaattgtatccagttaagaaatttgatcctg
agtgccttcccgagaaacatgaggctcccagacccattcactcctaatctgaaggtggac
atgttgagtgaaattaacattgctccccggattcttaccaatttcactggagtgatgcca
cctcagttcaaaaaggatttggattcctatcttaaaactcgatcaccagtcacttttctc
tctgatctgcgcagcaatctacaggtatcaaacgagcctggcaatcgctacaacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacatatccacaacaaa
ggcagcacgccttcaatgagtaccatcacccactcagcacacatggatatcttccagaac
ctagctgtggacttagatacagagggccggtatctcttcttgaatgcaattgcaaatcag
ctgcgatacccaaacagccacactcactacttcagctgcaccatgctgtacctttttgcc
gaggccaacacggaagctatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcgtttaagttctggaaccatgagtttgtacactgtgccccagaaatcgaaaagttattc
cagtcagttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaaggaact
ggtgccagttag
DBGET
integrated database retrieval system
