Dipodomys spectabilis (banner-tailed kangaroo rat): 122104929
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Entry
122104929 CDS
T07891
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122104929 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsp03019
]
122104929 (Clp1)
Enzymes [BR:
dsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122104929 (Clp1)
Messenger RNA biogenesis [BR:
dsp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122104929 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
TniB
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
122104929
NCBI-ProteinID:
XP_042531893
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MGEESNDDKKPTTKFELERETELRFEVEASQSVQLELLVGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagaatccaatgatgataagaagccaacgactaaatttgaactggagcgagaa
acagaacttcgctttgaggtggaggcatctcagtcagttcaattggagttgttggtgggc
atggcagagatctttggcacggagctgacccgaaacaagaaatttacttttgatgctggt
gccaaggtggcagttttcacttggcatggctgttctctgcagttgagtggtcgcacggag
gtggcgtatgtctctaaggacactcctatgttgctttacctcaacactcacacagccttg
gagcagatgcggaggcaggcggaaaaggaagaggaacgaggcccacgagtgatggtggtg
ggccccaccgatgtgggcaagtctacagtttgccgcctgctgctcaactatgcagtgcgt
ctggggcgtcgccctacttatgtggagctggatgtaggccagggctctgtgtccatccct
ggtaccatgggggccctttacattgagcggccagcagatgttgaagaaggtttctccatc
caggcccctctggtctatcattttggctccaccactcctggcaccaacatcaagctttat
aacaagattacatcacgcttagcagatgtgttcaaccaaaggtgtgaagtgaaccgaagg
gcatctgtgagtggctgtgtcattaatacctgtggctgggtcaagggctctggttaccag
gccttggtgcatgcagcttcagcttttgaagtggatgtggttgtggttctggatcaagaa
cgactgtacaatgaactgaaacgggacctgcctcacttcgtacgcaccgtactgctccct
aagtctgggggtgtggtagagcgctccaaggacttcaggcgggaatgtagggatgaacgt
atccgcgagtatttctacggattccggggctgtttttatcctcatgcctttaatgtcaaa
ttttcagatgtgaaaatttataaagtgggggcacccaccatcccagactcctgtttacct
ttaggcatgtctcaggaagacaatcagctcaagctggtacctgttacacctggccgagat
atggtgcaccatctactgagtgttagcactgctgagggcacagaagagaacctttctgag
acaagtgtggctggcttcattgtggtgaccagtgtggatctggagcatcaggtgtttact
gtcctgtctccagccccccgcccactgccaaagaacttcctccttatcatggatatccga
ttcatggatctcaagtag
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integrated database retrieval system
