Dichomitus squalens: DICSQDRAFT_143608
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Entry
DICSQDRAFT_143608 CDS
T03133
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DICSQDRAFT_143608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_143608
Enzymes [BR:
dsq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
DICSQDRAFT_143608
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
DICSQDRAFT_143608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
Pirin_C
nSTAND3
SRPRB
Motif
Other DBs
NCBI-GeneID:
18836360
NCBI-ProteinID:
XP_007361519
JGI:
143608
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MDTSENVSVHTRQWTLQPESEYRFELDPNTTLAIKLVSGHAEIFGAELAEGKAYIFGQEC
KAAVFTWQGCTIEMSHPSVEYLSDETPMSIYANVHLALEQMRVRALAAVDGSPIPEDEGD
DAIGIDPPRVLVLGPENSGKTSVCKILTNYAVRAGQDWVPIYVNVDPSEGGWAVPGAVSA
APITAPIQTSTPAATLGSAATSAPNHVSSNALLPLSYWYGHAEMRRNPLLMDRLIRNLGE
NIRDRYENDAEGRCAGLIVDTPSSFAASSSSSNDHRLTMIKACVDAFQINVILVVGHEKL
NVEMQRTYGNRMVVLKIAKSGGVVELDAAYRERVHKYQLHTYFYGHVMQPPPGLPSKAYV
QGGEQTPDQTMHLSPLSASVNFGDIVIYRIGEETMAPSSALPIGAARVVSEMQPLVVEPA
IGGSGLYNAILAILAPPNPDESERYDEEILDLPAVGFVAITALDIPNRRMTVLSPSPGSL
IGRTAIVGSFEWQE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggacactagtgagaacgttagcgttcacactcgtcagtggactcttcagcccgagtct
gagtacaggtttgagcttgatcccaataccacgcttgcaatcaagctcgtcagcggccat
gcggagatatttggcgcagaactcgcagagggcaaggcatatatattcggccaggaatgc
aaggcggccgtgttcacctggcaaggatgcaccatagagatgagccatccttcagtcgaa
tacctctctgatgagacgcccatgtccatttacgccaacgtccacctcgcgctcgagcag
atgcgcgtgcgcgcgctagccgccgtggatgggtcgcctattcctgaggacgaaggtgac
gacgcgattggtatagatccgccgcgcgtgctggtcctcggcccagagaactcggggaag
acgagtgtatgcaagatcctcaccaactatgccgtgcgcgcaggacaagactgggtgccc
atctatgtcaatgtcgaccccagtgagggtggctgggctgttcctggagcagtctctgcg
gcacccatcaccgcccccatacagacttcgacacctgctgccacccttggctctgcggcg
acctccgctccgaatcatgtgtcgtcgaatgctcttctccctctctcgtactggtatgga
catgcagaaatgcggcgaaatccactcctcatggaccggctcatccggaaccttggagag
aacatccgagacaggtacgagaacgacgcagaaggtcgatgtgcaggcttgattgtggac
acgccgtcatctttcgctgcaagctctagctctagcaacgaccaccgactgactatgatc
aaggcatgcgtggatgcattccagatcaatgtgatcctcgtcgtgggacatgaaaagctg
aacgtagagatgcaaaggacatatggtaaccgtatggtcgtcctcaagattgcgaagtcg
ggtggggttgtggaattggacgccgcatacagggaacgcgtccataagtatcagctccac
acctacttttacgggcatgtcatgcaaccgcctccagggctgccatcaaaggcctacgtg
caagggggcgaacagacaccagaccaaacgatgcacctctctccgttgtcggcatctgtc
aatttcggtgacatcgttatctatcggattggtgaagaaacgatggccccatcatctgcc
ctcccgattggggctgctcgtgtcgtctcggagatgcaaccgctcgtggtggagcccgcg
atcggtgggtctggtctctataacgccattctagccatactggctccgccaaatccggac
gagtccgaacggtacgacgaggaaattctcgacttgcccgcggttggcttcgtcgctata
accgccttggacattcctaataggcgcatgacggtcctgtcgcctagtcctggctctttg
atcgggaggacggcgatagtgggttcattcgagtggcaagagtaa
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integrated database retrieval system
