Dichomitus squalens: DICSQDRAFT_146168
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Entry
DICSQDRAFT_146168 CDS
T03133
Name
(RefSeq) Not1-domain-containing protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dsq
Dichomitus squalens
Pathway
dsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICSQDRAFT_146168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_146168
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DICSQDRAFT_146168
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DICSQDRAFT_146168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
18836566
NCBI-ProteinID:
XP_007364545
JGI:
146168
LinkDB
All DBs
Position
Unknown
AA seq
2120 aa
AA seq
DB search
MDGTASPNIHTIVKAQIVFLLSTLTEENFERNQVEIRSLSEQHGIDTYLHFIRRLIVYSH
NRLTSTTSPAAFDPSSALTFRLLVQETQRLARDPFLADRFRDGVDQGEGEVYRNFDFVKF
ADRVGLRPLERLILASSIVAAPTRRELAAQAATVIRVDFENAVLALCQHPSFDHADLNPN
QVAKLLSNLLAEVPSDAPILDATQRQALILAAQAKYGSEIVSPILQHIMPNLSLPPGTSL
VQALVQLGPDITSDADVVRSLMARFGISEVNPPTDAQVVDLVTSLARLASEGTSLPDVGA
VVRALSSFNSSLNWAAAIQAFDIPDRQGVDTATLKLLIAILMNTPRDEQHHAVTGFWSLW
SNTQYQLRLLDALLSLPADTFNFVNLPGRKIVTVEDVAGASPTIKSLAANVQGHTWNSLD
LFEVLVQAADFNSTEITNLVREMLDKAVKISAELVHMGLLQVPQASWNDIRLEYTQRLLA
MFLAGHPNHQLVFMRIWQIEPAYLTNAFRDFYDESNLNITRILDVAQDLKILDALLEVRP
FKFALDVAALASRREYLNLDKWLADNVTTHGADFLHAVIAFLELKMDSEKTVRVSDPPVE
PRTMQLSPQTIAIFLRVLRNSSSIMHENDVDYCLEVRNACLQIHPRLMNLVPGSDIEPGF
SVVTYSTEIETEVDGIYKQMYDEQITIDDVIKLLQRNKASSNPRDHEIFSCMLHFLFDEY
KFFQSYYPHRELAMTGYLFGSLIQYQLVDFIPLGIAIRYVLDALNCPPETNLFKFGIQAL
SRFESRLSEWQPLCQALLKIPHLLEARPDLAVSIQRALANGDGASSSADLRTLTSVPMIE
QPPIFTAIQPDRLDGEPEKPPEEVSDKILFIVNNLAPSNFESKLAEMKGHFQEHYSRWFA
NYLVDQRVSIEPNNHQLYLRFLDALDVQSLFRFVLHETLVKSAVLLNSEKTQQLSSERAV
LKNVGSWLGSITLARDRPIKHKNLSFKDLLIEGYDNNRLVVAIPFVCKTLEPAARSKVFR
PPNPWLMAVISLLTELYHFAELKLNLKFEIEMLCKALDIDLDVVQATTILRNRPLSDSLA
GPPLPDYVGDIDSLPMGGYDPTAQGQDAQVIPLGPTSPSDTQRVLGAHIENILSSILPHV
TINPQLAPLNTNPSFKRAIQMAIDRAVREIILPVVERSVTIAGISTRELVAKDFVTEPNE
DKLRKAGHLMAQKLAGSLALVTCKEPLKGNLGSHIRQFLSEFGFTDQIVPDQVIFLLVQE
NIELACQAIEKAAMDRAVIDVDDGFAAAYELRRRHRESRPGQPFWDSSVPQSNVFGSLPD
PLRIKPTGVQQIQAAVYEDFSMDPKRRMFISRPNSTVSYSRNDQIPSLYSPSPAPEQPGQ
ALLRPQEAMERFNALVRDLEAVLIQLPIASLAALPPNHEVRHLVRQILFIAADSIDRSRT
PLLMSQKIVQLLYKTPSQLGREIYVALLDQLCHSFEEVAREAITWLIYAEDERKFNVPVT
VTLLRSGLVTISQEDQQLAKLLYSDPRPSLQNFAAGLIRECLAADPPLATQAQFSYSLEA
FNQLAQQGKTNDEASRLLDDLRGVPRRTAQTANTPVADSQPARQPSVKPETETLREKLFI
WFQQWISIYQRSHSPEKSFVPYITQLTRQGILKAEDVSSFFFRVCAESSVNSYIKHVNAG
EFGFAFQALDAMSRLIVYIIKYHGDASGVNNDQAKVHYLTKILSIFVLVLANMHEEQGPH
FQQKPFFRFFSSLLNDLHSVESSLGSAYFQLLIAISDTFSSLQPTYFPGFAFSWMSLISH
RLFMPKLLLSDNREGWSAFYKLLLSLFKFLAPFLKTADLQPAGRDLYRGTLRLLLVLLHD
FPEFLSEYYFSLCDVIPPRCIQFRNIVLSAYPPNVVLPDPHLRDIDFEAIPEMGPIPPIL
SDFAASLRAGDLRMYLDQFLLNRGPQSTFLSSLKDRLRVPAQEGAAETYNLPLINSLVMY
IGVSSVAQARARSGGPLFVPTDPGVVALHYLATNLDVEGQHHLLSAMVLHLRYPNAHTHW
FSSLMLYLFHDIQVDQFREIVTRVLLERFLVHRPHPWGALVTFIELLRNPKYNFWNQEFI
HIAPEVTLLLENVARSIFQS
NT seq
6363 nt
NT seq
+upstream
nt +downstream
nt
atggacggcaccgccagccccaacatccatactatcgtcaaagcgcagatcgtctttttg
ctctcgaccctcacggaagagaacttcgagcgaaatcaggtggagatacgttcactttcc
gagcagcatggaatcgacacatacctccacttcatacgccgtctcatcgtttactcccat
aacagactcacatctaccacatcacccgccgcatttgatccctcctccgccctgacattc
cgcttgctcgtccaagagacccagcgcctcgcacgcgatccgtttctagcagacaggttt
cgagatggtgttgatcagggagaaggagaggtataccgcaactttgactttgtcaagttt
gcggaccgagttgggcttcgcccgctagagaggctcatcttggcgtcctccatcgtcgcc
gctccaactcggagagaacttgcggcgcaggcggcgaccgtgattcgtgtagacttcgag
aacgctgttttggctttgtgccagcatccttccttcgaccatgccgatctcaatccgaat
caggtcgcgaagttgctgtcgaacctccttgccgaagtcccttccgatgctcccatcctg
gatgccacccagcggcaagccctcattcttgctgcccaagcgaagtacggttcggagatc
gtctccccaattctccagcatattatgcctaatctgagtcttccgcctggaacatctctt
gtgcaagcattggtacagctgggacctgacatcacgagcgatgcggacgttgtccgttcc
ctcatggcaagattcggaatcagcgaggtcaaccctccgactgatgctcaagttgtggat
ctcgtgacttccctcgcgcggttggcttccgaagggacatcattgcccgacgtcggtgct
gttgtacgggcgctcagtagcttcaatagcagtctcaactgggccgctgccattcaggca
ttcgatatccctgacaggcagggcgtcgacacggcaactctgaagctgcttatcgctatc
ttaatgaacacgccgcgcgacgagcagcaccacgcagtcactggcttttggtctctctgg
tccaatactcaataccaacttcgcctgctcgatgctctgttatctcttcctgcggacacc
tttaactttgtcaatcttccaggccggaagatcgtcaccgtcgaggatgtcgcgggtgcc
agtcctaccatcaaatcactggctgcgaacgtgcaagggcacacttggaactcgctggac
ttgttcgaagtgttggttcaggcagccgacttcaacagcacggagatcacaaacttggtg
cgcgagatgttggacaaggcagtcaagatcagtgcagagctcgtgcatatgggtcttctg
caagttccgcaagcgtcatggaacgacatccgcctggagtacactcagcggctcctcgct
atgtttctggctggtcacccgaaccatcaactcgtgttcatgcggatctggcagatcgag
cctgcgtacctcactaacgcgttccgggacttctacgatgagagtaacctcaacatcacg
aggatattagacgttgcacaagatcttaaaatcttggatgcattgcttgaggtccgaccg
ttcaagttcgccttggatgttgctgcgttagcctctcgtcgcgagtatctcaacttggac
aagtggcttgccgacaacgtcacaacacatggcgccgatttcttgcacgctgtcatcgcc
ttcttggagctcaagatggacagtgagaagaccgtgcgagtttcggaccctcctgtcgag
cctcgtacgatgcagctttcgcctcagaccatagcaatattcttgcgggtgttgcgcaac
agctctagcatcatgcatgagaacgacgtcgactattgcctcgaagtgcggaatgcttgt
ttgcagatccacccgcgtctcatgaacctggttcctggttccgacattgagccaggtttc
agtgtcgtcacgtactctacagagattgagacggaggtcgacggcatctacaagcagatg
tacgacgagcagatcaccattgacgacgtcatcaaactgctgcagcgcaacaaggcttcc
agtaacccccgcgaccacgagatattctcttgcatgctgcacttcctcttcgacgagtac
aagttcttccagtcgtactatccacaccgcgaacttgccatgaccggctatctgttcggc
tcccttatccaataccagcttgtcgatttcatccccctcggcattgctatccgctatgtc
ctggacgctctcaactgtccgccggagactaacctcttcaaattcggcattcaagcgctc
tcccgattcgagtcgcgcctctccgagtggcaaccgctctgtcaggctttgctcaagatc
ccacacctactcgaggcgcgccctgacctcgcagtcagcatccagcgcgcgctcgccaat
ggagatggcgcgagcagctctgcggatctacgaacactgacatcggtgccgatgatagag
cagccgccgatttttacggctattcaacctgaccggctggacggcgagcctgagaagccg
ccggaagaggtgtcagacaagattttgttcattgtgaacaatctcgccccgtcgaatttc
gaatcgaagctggcggagatgaaggggcacttccaggagcattattcgcggtggtttgca
aattatctagttgaccagcgcgtcagcatcgagccgaacaaccatcagctgtaccttcgc
ttcctcgatgccctggacgtccagtcattgttccgattcgtcctccacgagactctcgtc
aaatctgcagtactgctcaactcggagaagactcagcagctcagctcggagcgtgctgtc
ctgaagaacgtcggttcgtggctgggcagcatcacgcttgccagggatcgtccaatcaag
cacaagaacttatcgttcaaggacctgctcattgagggctacgacaacaacaggctcgta
gtcgcaatcccgttcgtctgcaaaacgcttgagccagcggcgcgctccaaagtgttccgc
cccccgaacccatggctgatggccgtcatcagccttctcaccgagctgtatcacttcgcc
gagctcaaactcaacctgaagttcgagatcgaaatgctttgcaaggcgctcgatatcgac
ctcgatgttgtgcaggcgactactatcctccgcaatcgtcctctatctgattcgctcgcc
ggtcctcccctccctgactatgtcggcgatatcgactctctgcctatgggtgggtatgat
ccgacagcgcaaggacaggacgctcaggtaatacccctaggaccgaccagtccttctgac
acccagcgcgttcttggcgcccacattgagaacatcctgtcgagcatcctccctcatgtc
accattaaccctcaactcgcccctctcaacacaaacccgtccttcaagcgtgcgattcag
atggcgattgaccgcgctgtccgcgagatcatcctccccgtcgtcgagcgctccgtcacc
atcgccggcatatctacccgcgagctagttgctaaggacttcgtcacggagcctaacgag
gacaagctgcggaaggctggtcacctcatggcacagaagctcgctggaagtttggctctg
gtcacctgcaaggagccgctcaaaggcaatctcggcagccacatccgccagttcttgtct
gagttcggcttcactgatcaaatcgttcccgaccaggtcatcttcttgctggtgcaggag
aatatcgagcttgcttgccaggctatcgagaaagcggctatggatcgtgcggtgattgac
gtcgatgacggttttgcagctgcatacgagctccgcagacgtcacagggagtcacgacct
ggccagcccttctgggacagctctgtgccgcaatctaatgtcttcggttctctacctgac
ccgctgcgcatcaagcccaccggcgtgcagcagatccaagcagccgtctacgaggacttc
agcatggaccccaagcggcgcatgttcattagccgtccgaactcgacggtatcgtactcc
cgcaacgaccagattccttccctttacagtccgtcgcctgccccagagcagcccggtcaa
gcactgctccgtcctcaggaagccatggagcgtttcaacgctctcgtcagggatctcgag
gccgtgctcatacagctccctatcgcctcccttgccgcgctgccacccaaccacgaagtc
cgccaccttgtccgtcagatcctcttcatcgctgccgattccatcgaccgctcccgcacg
cccctcctcatgtcccagaagattgtacagttgttgtacaagaccccttctcagcttggt
cgcgagatctacgtcgctttgctggatcagctgtgccactcgttcgaggaggttgcacgg
gaggcaatcacgtggctgatctacgccgaggacgagcggaagttcaatgttcccgtcacc
gtcaccctcttgcgcagcggccttgtgaccatctcgcaggaggatcagcaattggcgaag
ctgctgtactcggatccccgcccaagcctgcagaatttcgctgctggactgatccgggag
tgcctcgcggctgacccgcccctcgctactcaggctcagttctcgtactcgcttgaggcc
ttcaatcagttggctcagcaaggcaaaacgaacgatgaggctagtcggttgctggatgac
ctccgtggcgtaccgcgtcggacagctcaaacggcgaatactccagtggctgacagtcaa
cctgctcgtcaaccttctgtcaagccggagacggagactttgcgtgagaagctgttcatc
tggttccagcaatggatcagcatttatcagcggtcgcactcgcccgagaaatcatttgtg
ccgtacatcacccagctcacgcgccagggcatcctcaaggccgaagatgtctcttcgttc
ttcttccgagtttgcgcggagtcgagcgtgaacagctacatcaagcacgtcaacgctggc
gagttcggcttcgctttccaggcactggatgccatgtcgcgcttgatcgtgtacatcatc
aagtaccacggcgatgcgtccggcgtcaacaacgatcaagccaaggtccactacctcacg
aagattttgtccatctttgtgctcgtgcttgccaacatgcacgaggagcagggccctcac
ttccagcagaaaccgttcttccgcttcttctcaagccttctcaacgatcttcactcggtt
gagagtagtctgggatcggcctacttccagttgctcatcgctatcagtgataccttcagc
tcgctgcaaccgacgtacttcccgggctttgccttctcgtggatgagcttgatctcgcat
cgtctcttcatgccaaaattgctcctgtccgacaatcgcgagggatggtctgccttctac
aagcttctgctgtcgctcttcaaattcctcgcgcctttcctcaaaactgctgatctgcag
cctgctggtcgcgatctttacaggggcactctacgccttctcctcgtcctgcttcacgac
ttccccgaattcctcagcgagtactacttctccctctgtgacgtgatccccccgcgttgc
atccaattccgcaatatcgttctcagcgcataccctcccaatgtcgtccttcccgatccc
catctgcgggacatcgacttcgaggcgatacccgagatgggtcccattccgcccatcctg
tccgacttcgcagccagccttagagcgggtgacctcagaatgtaccttgaccaattcctg
ttgaacaggggtccgcagtctacattcctgtcgtcactcaaggatcgcctccgcgttccg
gctcaagagggtgctgcggagacgtacaatctccccctcatcaactcgcttgtcatgtac
atcggggtttcttctgtcgctcaggcgagggctcgcagcggaggtccgctcttcgttccg
accgaccctggtgtcgttgccttgcactacttggcgaccaatctggatgttgaaggtcag
caccacttgctcagtgcgatggtccttcacttgcgctaccccaatgcgcatacgcattgg
ttcagctccttgatgctgtacctcttccatgatattcaggttgatcagttcagggagatc
gtgaccagggtattgctggagcggttcctagtccaccgtccgcacccgtggggcgctcta
gtcacgttcattgagctgttgcgcaaccccaagtacaacttttggaaccaggagttcatc
cacattgctcctgaggtcacgcttctgctcgagaatgtcgcgaggtcgatcttccaatcc
tag
DBGET
integrated database retrieval system
