Dichomitus squalens: DICSQDRAFT_81021
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Entry
DICSQDRAFT_81021 CDS
T03133
Name
(RefSeq) ATP-dependent RNA helicase ded-1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
3.6.4.13
]
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsq03019
]
DICSQDRAFT_81021
03041 Spliceosome [BR:
dsq03041
]
DICSQDRAFT_81021
03036 Chromosome and associated proteins [BR:
dsq03036
]
DICSQDRAFT_81021
Messenger RNA biogenesis [BR:
dsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DICSQDRAFT_81021
mRNA cycle factors
Common to processing body (P body) and stress granule
DICSQDRAFT_81021
Spliceosome [BR:
dsq03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
DICSQDRAFT_81021
Chromosome and associated proteins [BR:
dsq03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
DICSQDRAFT_81021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
18844375
NCBI-ProteinID:
XP_007362874
JGI:
81021
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MSNGTVNGTGLENQFASLGINGTKSAYVPPHMRSTQRAASSPVVPVSNGNGWNDSRSSTP
SLRGGFKSEPRDGGGLGGAGRSFSTYGGRGGGPGGDRWGGDRPQSNGWQGNGGAPRGGDG
PRESFGYGAWRDGKHVPGGRNMRMEKELFGEENDPSKQHTGINFEKYDDIPVEATGAGVP
DPVNAFTNPPLDPVLLENIGYARYTTPTPVQKYSIPIVAAGRDLMACAQTGSGKTGGFLF
PILSASFTNGPRSAPAEQTPPVGYGRSRKAYPTALILAPTRELVSQIHEEARKFCYRSWV
RPAVVYGGADINQQLRQIERGCDLLSATPGRLVDLIERGRISLANIRYLVLDEADRMLDM
GFEPQIRRIVQGEDMPGVHERQTLMFSATFPRDIQMLARDFMKDYVFLSVGRVGSTSENI
TQRIEYVEDNDKRSVLLDVLQAHGTGLTLVFVETKRMADMLSDFLLGNNLPATSIHGDRT
QRERETALQTFRTGRTPILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAG
NVGVATAFFNRGNRNIVRDLLELLREANQEIPGWLDTVAQENSFGGSFRGRGGRGGGRGR
GGANRDARQGGGGGYGGNRGGGYGGGGSFGGPQYGGGGYGGGGGGGSWW
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatggaactgtaaacggtaccggattggagaaccagtttgcctctctcggtatc
aatggtacaaaatcagcttatgtccctcctcacatgaggagtacgcagcgggctgcctct
agccccgtggttcctgtgagcaatgggaacggctggaacgactcccgctcttccactcct
tccctccgcgggggcttcaagagtgaacctagggatggtggtggtttaggtggtgcgggc
agaagcttctccacttatggtggccgcggtggtggccccggaggtgaccgttggggaggt
gaccgcccccagtcgaacggatggcaaggcaatggcggagcccctcgtggcggcgatggt
cctcgcgagtccttcggctacggcgcatggagggacggcaagcacgttcccggcggtcgc
aacatgcggatggagaaagaacttttcggcgaagagaatgacccgtcgaagcaacatacg
gggatcaacttcgagaagtacgatgacatccctgtggaggccactggtgctggtgtgccg
gaccctgtgaacgcatttacaaacccccctttggatccggtcctcctcgagaacattggt
tacgctcgctacaccactcccactcccgtacaaaagtattcgatccctatcgttgctgca
ggcagagacttgatggcatgtgctcagacgggttctggaaaaacaggtggattcctgttc
cctatcctttccgcatccttcaccaatggccctcgctctgctcctgccgaacaaactcct
cctgttggctatggccgcagccgcaaggcatatcccacggcgctcatcctcgctcccacg
cgcgagttggtcagccagatccacgaagaggcccgcaagttctgctaccgctcgtgggtc
cgccctgccgttgtgtacggtggtgccgatatcaatcagcagctgcggcagatcgagcgg
ggatgcgatctgttgagtgcgacccccggtcgtctcgtggatctgatcgaacgcgggcgc
atcagccttgccaacatccgctaccttgtcctcgatgaggccgatcgtatgctcgacatg
ggtttcgagccgcaaattcgcaggattgttcagggcgaagacatgccgggggtccacgag
cgtcagacgctcatgttctccgcgacattccctcgggacatccagatgctcgcgcgcgac
ttcatgaaggactacgtcttcctctctgtcggtcgtgttggttcgacctcggagaacatc
actcagaggatcgagtacgtcgaagacaatgacaagcgctcagttcttttggacgtcctc
caggcccatggcacgggtctcacccttgtgttcgtggagactaagcgcatggccgacatg
ctttccgacttccttctggggaacaaccttcccgcgacctccatccatggtgatcgtacg
cagcgcgagcgcgagacggccctccagacgttccggaccggtcgcacgcccattctagtg
gctactgccgtcgccgctcgtggtctcgatatccccaacgtcacgcacgtcatcaactac
gacttgccatctgatatcgacgactatgttcaccgtatcggtcgtaccggccgtgctggt
aacgtcggtgtcgccacagcattcttcaaccgaggcaaccgcaatattgttcgtgacctg
cttgagctacttcgtgaggctaatcaggagattcctggctggcttgacactgtcgctcaa
gagaactccttcggcggctctttccgtggccgtggtggtcgtggtggtggccgtggccgt
ggaggggccaaccgcgatgctcgccagggcggcggaggtggctatggcggtaatcgcggt
ggaggctatggcggcggcggaagcttcggtggtccgcaatatggtggcggaggctacggc
ggaggtggtggaggcggcagctggtggtag
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