Dyella thiooxydans: ATSB10_00130
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Entry
ATSB10_00130 CDS
T04308
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dtx
Dyella thiooxydans
Pathway
dtx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dtx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATSB10_00130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dtx03019
]
ATSB10_00130
03400 DNA repair and recombination proteins [BR:
dtx03400
]
ATSB10_00130
Enzymes [BR:
dtx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATSB10_00130
Messenger RNA biogenesis [BR:
dtx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATSB10_00130
DNA repair and recombination proteins [BR:
dtx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATSB10_00130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AND67467
UniProt:
A0A160MXF8
LinkDB
All DBs
Position
10817..12727
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AA seq
636 aa
AA seq
DB search
MGHARRLNAPGADAPAGPDPAAGLDPFATIARMPASPLHVLQSVFGYASFRGHQQAIVEQ
VIEGGDALVLMPTGGGKSLCYQVPAIVRQGTGVVVSPLIALMQDQVDALHEAGVAAAYLN
SSQDGEAQREVERQLMAGELDLLYVAPERLLMPRLLGLLERTEVALFAIDEAHCVSQWGH
DFRPEYRELAVLHERFPQVPRIALTATADPRTREEIVERLALQQARQFVSSFDRPNIGYR
VSLKHNPRTQLMQFLDGHRGESGIVYALSRRKVDETAAWLADAGFEALPYHAGMEAADRA
RNQQRFLREEGVVMVATVAFGMGIDKPDVRFVAHLDLPRSMEGYYQETGRAGRDGLPAEA
WMIYGLADVVTMSQMIAQSESADERKRIERQKLESLLAYAEATRCRRELLLGAFGEPYEG
PCGHCDNCVSPPKTWDATVPAQKALSAVYRSGQRYGSGHVIDILRGIDSERVGQLGHDKL
TTFGVGADMDEKAWRSVFRQLLAAGLLATDPEGYGTLRLTAASRGVLTGGERVLLREDAR
PVRSTRRRRDSQLVTGASIGIEAYEQPLWDALRATRSQLAKQHGVPPYVVFHDATLLAML
RAMPSNEDELASISGVGEAKLKRYGRDFLAVINAAE
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtggggcatgcccggcggctgaacgcgccgggcgccgatgcaccggcggggccggacccg
gcagccgggcttgacccgtttgctaccatcgcccggatgcccgcctccccgcttcacgtc
ctccagtccgtcttcggctacgccagtttccgcggccaccagcaggccatcgtcgagcag
gtgatcgagggtggcgacgccctggtcctcatgcctaccggcggcggcaagtcgttgtgc
taccaggttcccgccatcgtgcggcagggcaccggcgtggtggtgtcgccgctgatcgcg
ctgatgcaggaccaggtcgacgccctgcacgaagccggcgtggccgcggcctacctcaat
tccagccaggatggcgaggcccagcgcgaggtcgagcgccagctcatggccggcgagctg
gacctgctctacgtggcgcccgagcgcctgctcatgccgcgcctgctcgggctgctcgaa
cgcaccgaggtggcgctgttcgccatcgacgaagcgcactgcgtgtcgcagtgggggcac
gatttccgcccggaataccgcgagctggcggtgctgcacgagcgcttcccgcaggtgccg
cgcatcgccctcaccgccaccgccgacccgcgcacccgcgaggagatcgtcgagcggctg
gcgctgcagcaggcgcggcagttcgtctccagtttcgaccggccgaacatcggctatcgg
gtcagcctcaagcacaacccgcggacgcagctgatgcagttcctcgacggccatcgtggc
gagtccggcatcgtctacgcgctcagccgccgcaaggtggacgagaccgccgcctggctg
gccgacgccggattcgaggcgctgccgtatcacgccggcatggaggcggccgaccgcgcc
cgcaaccagcagcggttcctgcgcgaagagggcgtggtgatggtggccacggtcgccttc
ggcatgggcatcgacaagccggacgtgcgcttcgtggcgcacctggacctgccgcgctcg
atggagggctactaccaggagaccggccgcgccggtcgcgacggcctgccggccgaggcg
tggatgatctacggcctggccgacgtggtgacgatgagccagatgatcgcccagtccgaa
tcggccgacgagcgcaagcggatcgaacggcagaaactggagtcgctgctggcctacgcc
gaggccacccgctgccggcgcgagctgctgctcggtgccttcggcgagccctacgagggg
ccgtgcgggcattgcgacaactgcgtgtcgccgccgaagacctgggatgccaccgtgccg
gcgcagaaggcgctctcggcggtgtaccgcagcggccagcgttacggctcgggccacgtc
atcgacatcctgcgtggcatcgacagcgagcgcgtcggccagctcggccacgacaagctc
accaccttcggcgtcggcgccgacatggacgagaaggcctggcgctcggtgttccgccag
ctgctcgccgccggcctgctggccaccgatccggagggctacggcacactgcggctcacg
gcggcgagtcgaggcgtactcaccggcggcgagcgggtgcttctgcgcgaggatgcgcgg
cccgtgcgcagcacccgacggcgtcgtgacagccagctggtcaccggtgccagcatcggc
atcgaagcctacgaacagccgctgtgggacgcgctgcgcgccacccgttctcagctggcc
aaacaacatggcgtaccgccttacgtggtgttccacgacgcgaccctgctggcgatgctg
cgggcgatgcccagcaacgaggatgagctggcctcgatcagcggcgtcggcgaggcgaag
ctcaagcgctacggacgcgatttcctggcggtgatcaacgcggcagaatga
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