Nitratidesulfovibrio vulgaris RCH1: Deval_1403
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Entry
Deval_1403 CDS
T02064
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dvg
Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Deval_1403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dvg03400
]
Deval_1403
Enzymes [BR:
dvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Deval_1403
DNA repair and recombination proteins [BR:
dvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Deval_1403
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
AAA_19
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADP86559
LinkDB
All DBs
Position
1602360..1605839
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AA seq
1159 aa
AA seq
DB search
MDFAALVRKLASKGCGHIEVTRSGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLT
LFSPDASAGDSPLVKPRWESRWVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLIT
VDNFLSKLPPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIV
DIYPPGYERPLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATA
RWKRLFSKGMLTEEQYAGLLRGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILPGRKEL
VDAVEAAQQNWEALFDKQAEEGGARQPRGLVLRDAAPVRQLYEEKDSAGFEPLVMGVERT
GVDMPERKLHGFVDLFPAPDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLKLA
EQDGITPTLRYDPKGRGLMAVVAPYRAGVELAWDGTLVIGEDVLQPKTDRSARVASGAFR
GLDKHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLV
QRFKGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGEL
YREFEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEG
RQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIG
THRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSG
IRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYV
RKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQ
MFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMED
LRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDPPRESVETELNIGIPAHIPE
GYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQ
VQRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDTGLAAGARL
DAMRGELFRLVPDSTPSSA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttggatttcgccgcactcgtccgcaagttggccagcaagggctgtggacacatcgaagta
acacgtagcgggatggcgacggcagcgcgtctgggcaacgccgtgctcgacgccggtcgc
agtgccgtcatggtcgtccgcgatgcggaagaacttgccctcgcccgcggtctgctcacc
ttgttctcgcctgacgcctcggctggtgactccccgctggtgaagccccgctgggaatcg
cgctgggtggtcatgccgcagcacccactcggggcgcgcaaccgtgatgcgtgggcaagc
cgcatggcagccctctttgcccttgggcagaaacgtgtgccgcaaggcgtgctcatcacg
gtcgataacttcctctcgaaattgcccccggcagaccttttcgcctcgcatgagctgacg
cttgcctgcggcgacgagatggcgcccgagttggtgctcgaacaggcggtggactgggga
ttcgacagggtgcagatggtttcgcgtcccggcgaaatcgccgtgcgtggcgatatcgtc
gatatctaccccccaggctacgaacgtcctctccgtttggagttcttcggcgagacgctg
gaggagattcgccttttcgatgcgtcgaaccagcgctctctcggcaagctggacgagatg
gtgctcctgcccgtgtcgcccgtcgtgctcagtgccgaactgcgcagcaaggccacagcg
cggtggaagcgacttttctccaagggcatgctcaccgaagaacagtacgccgggctgctt
cgcggtatcgagcgccatggcgaagggctcatgcccggtgcctattacgaggcacctacg
gtcgtcgaggaatggctaccgcgcgatgccgcatggatactgcctggccggaaggaactg
gtcgacgctgtcgaggcggcgcagcagaattgggaggcccttttcgacaagcaggccgag
gagggcggggcaagacagccccggggactcgtcctgcgtgacgcggcacccgtgcgccag
ttgtacgaagagaaggactctgcgggattcgagccgctggtgatgggggtcgagcgcact
ggcgtggacatgccggagcgcaaactccacgggtttgtcgacctgttcccggcccctgat
gcacgagaccgcccatggcaagcgcttgtcgcgggactccacaggttcgtggcgacacat
gcccgtgtgctgctctgcttcggcaatgaacgtggcaggcgcaagttcctgaagctagcc
gagcaggacggtatcacgccgacgttgcgctacgaccccaagggcagggggctgatggcg
gtcgtggccccgtaccgtgcgggcgtcgaactcgcgtgggacgggacgcttgtcatcggt
gaggatgtcctccagcccaagaccgaccgctcggcacgtgtcgcctccggtgccttccgt
ggactcgacaagcatgaagggcttcagccgggcgacctgctcgtacaccgtgattatggt
gtggcccgtttcgttggtcttgagcgcatggaccttggcggggtcggtaacgatttcctg
ctgctcgagtatgcaggtgacgacaggctctatcttccggtcgaccggctttcactggtg
cagcgtttcaagggggccgatgacacgaagccctcgcttgacaggcttggcggcggggcg
tggcagtccagcaaggacaaggcccgcaaggccatcgaaaagatcgccgccgacctcgtc
gagatgtacgcctaccgcaagattgccaagggctacacctatggccccatcggggagttg
taccgcgagttcgaggcgtcgttcggcttcgaggagacccccgaccaggcgcgcgccata
caggacgtgctcgaggatatggacaagcccgtgcccatggaccgcctcgtatgtggcgac
gtgggcttcggcaagaccgaggtcgcgttgcgcgccgccttccgtgccgcctccgaggga
cggcaggtggccttgctctgtccgacgacggtgcttgcagagcagcattaccagaccttt
cgcagcaggctcgcgggttttcccgtcaatgtcgggatgttgagccgtttcgtgagcaag
cagaagcagaccgaagtgcttgcggctgccgccaaggggcatgtcgacatcctcatcgga
acgcacaggctgctgtccgatgacgtgcgactgcccaacctcggcctgctcgttctcgac
gaagaacagcgcttcggcgtgcggcacaaggagaagctcaagcagttcaggcgcaacgtc
gatgcgctgaccctgacggcgacacccattccccgtacgcttcagttgtccatgtcgggc
attcgcgagctttccgtcatcgagaccgcgcccccggaacgaaagcccgtggcaaccgcg
ctcatcgaacgtgatgatgcggccctcaagtccatacttgagcgggagatcgcccgagaa
gggcaggtcttctgggtgcacaacagggtgcaagggcttgaacgcacgacggaatacgta
cgcaagctcgtgccggacgcacgggtgggtatggcccacggccagatgaccgaacgcgcg
ctggaagagaccatgcaccgtttctggcatggcgaactcgatgtgctggtgtgcaccgcc
atcgtcgaatccgggctggacttcccgcgtgccaacaccctcatcgtcgaccaggcgcag
atgttcggcctcggccagctgtaccagttgcgcggacgcgtcgggcggtctgacaggcag
gcgtatgccatcttcgtcgtgcctgatgcggacaacctgtccgacatcgcacgcgagcgc
atgcgtgtcatcctcgatatggactatctcggcgcgggctttcaggtcgccatggaggac
cttcgtatccgtggtgcggggaacatcctcggcgaggcccagtccgggcacatgacgcgc
gtggggcttgaactgttccttgagatgctcgaagaggccgtgactcgcctcaagggtgac
ccgccgcgcgaaagcgtcgagacggaactcaacatcggcatccccgcgcatatccctgaa
ggctacatcgaagacgcccgtgaccgtctccggttctacaaggcgctgtcttcggcgacc
gatgccgcagcccagcaggacatcgagatggagatgcgcgaccggtacggtgtgttcccc
cccgagttggagacgtttctcgcgttgctcgttctcaagcggcaattgcgtcgcatgcag
gtccagcgggcggacatctaccccgacaaggtgcgcctcgtctgggacgaacgtcagacc
gccgtggatatcggcaggctcatcgagtgggtcggccagcatgcggacagggcgagactc
cagccccctgcaactctcgaatggcggcttgacaccgggcttgcagccggggcacgactt
gacgcgatgcgcggcgaactcttccggcttgtccccgattcaaccccttcgtcggcataa
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