Drosophila virilis: 6629530
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Entry
6629530 CDS
T01066
Symbol
Rrp6
Name
(RefSeq) exosome complex component 10 homolog
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dvi
Drosophila virilis
Pathway
dvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6629530 (Rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvi03019
]
6629530 (Rrp6)
Messenger RNA biogenesis [BR:
dvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
6629530 (Rrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
6629530
NCBI-ProteinID:
XP_002053964
UniProt:
B4M173
LinkDB
All DBs
Position
2:13234340..13237855
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AA seq
904 aa
AA seq
DB search
MPQPPKRNNPTQPEQSTGPEVDANAQTSSEPTDLISFTTEAFRNVVAATRNCNAFPQGAA
RSLYLSYPGYARMLEEQSQRVLGLISKVLKTENISGDIKRCQGDEQLELVQECNDILFER
ITTNLDIISGLRRGNPHMVVETQVDVQSTSKAATSTITKETPRAGSWNRYSTAPATPSRS
MVSARLFTAQNIMRPQIQFKVPVDNSAQNPFKPRLKEKPNSLKPLALLPEYDDAGNVVSF
LHPYEFELLKFEPPKEQLQKQKPLLPAPPAQTELMLVDNVETLKQALEELRQAPQIAIDV
EHHSYRTFMGITCLVQMSTRTKDYIFDTLTLREDMHILNLVLTDPKVLKILHGGDLDIEW
LQRDLSLYIVNMFDTHRAAKALNMARLSLAFLLKHYLDLDVDKSLQLADWRMRPLPQKLI
DYARQDTHYLIYVYERLTNDLLQAEQGPQALRMVYQMSTEVCKKRYTKPHIGPDSHLDLV
RKTKRSFDNRQLSALRGIFVWRDATARQEDESYGYVLPNHMMLQIAESLPREMQGILACC
NPIPPLVRQQLHTLHQIVLRAREQPLVKPILEASNNITGPILLQITNKDYNSKLNCPHDF
SHQEETRDDLPTLLGLNGSGKLQRPSKPRLEAPSVPLAAPTLSLFKRQTASTQEDQLRLL
RARKESQTMRMPYKRYMAILPLMQQQKIEQTAKENNELLKRRLCPAEPAPVNIKLESTTK
VDEDPVYKLPLKEQLKRKHQPTADQPSLAKRNKNEEKPSASMSGAKPKVKNEPMAAIDQT
PNAEDSDDDAVIEVPIEKSPTENPTPALSRRQQKRQEKNKRFKAKARTQAQSSNKPVQLP
TNTATAQNFDYKNVDFRQFQGGAKRAQSTEIKSQMRGKSRHNNRNNKQFNKLFTFSKINK
ERKK
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagccaccaaagcgaaacaatccgactcagccagagcagtcgacaggacccgaa
gtggatgctaatgcccaaaccagctcagagcccacagacttgatcagctttaccacggag
gcctttcgcaatgttgtagctgccacacgcaactgtaatgcgtttccccaaggtgcagcg
cgttcgctttatctgagttacccgggctatgcacgcatgttggaggagcagtcgcagcga
gtgctgggcctgattagcaaggttttaaagacggagaatatttcaggggatattaaacgg
tgtcagggcgacgagcagctggaattggtgcaggaatgtaatgatattctattcgagcgt
atcaccacaaatctagacattataagcggcctaagacgcggcaatccacacatggtggtc
gaaacccaggtcgatgttcaatccacatcgaaagccgcaacatcaacaataacaaaggaa
acacctcgtgctggtagctggaatcggtacagcacagctccggccacaccctctcgcagc
atggtctcagcccgtctgtttacagcgcagaatattatgcggccgcaaatacagtttaaa
gtgcctgtagacaatagcgcacaaaacccttttaagcctcgtcttaaggagaaacccaat
tcattgaagcctttggcactactgccagaatatgatgatgcaggtaacgtagtgtctttc
ctccatccgtatgagtttgagctgctgaagttcgagccgcccaaggagcagctgcagaag
caaaagccgctgttgccggcgccaccagcccaaaccgaactgatgctagtggacaatgta
gaaacactgaagcaggctttagaagaactgcgtcaggcgccgcaaatagccatcgatgtg
gagcatcactcgtatcgtacatttatgggcatcacttgtctggtgcaaatgtcgacgcgc
acaaaagactatatattcgatacattgacgttgcgcgaagacatgcacatcctaaatctt
gtgctcaccgatcccaaagttttaaagatattgcacggtggcgatttggatatcgagtgg
ctgcaacgcgatctctccctgtatattgttaacatgtttgatacgcatcgagctgccaaa
gctttaaatatggcgcgtctatcgctggcatttttactgaaacattaccttgatcttgat
gtggataaaagcctgcagctggcagactggcgtatgcgcccactgcctcagaaactgatt
gattatgcgcgccaggacacacactaccttatctatgtgtacgagcgtctcacaaacgat
ttgctccaagcagagcaaggaccgcaggctttgcgcatggtttatcagatgagcacggaa
gtttgtaagaagcgctacaccaagccgcacattggtccagattcacatctggatttggtg
cgtaagacgaagcgctcctttgacaatcgccaattatctgcactccgcggcatctttgtg
tggcgcgatgcgaccgcacgccaggaggatgagagctatggctatgtgttgcccaatcat
atgatgcttcagattgccgagagtttgccccgtgaaatgcaaggcatattggcctgctgc
aatcctattccgccactggtgcgccagcaactccacacactgcatcaaatcgtgctacgt
gcgcgcgaacaaccacttgttaaacccatattagaggcctccaacaacatcactggaccc
attcttttacaaataacgaacaaagattacaacagcaaactgaactgtccgcatgacttt
tcgcatcaggaggagacacgcgatgatttgcccacacttcttgggctcaacggttcgggc
aaattacagcgtcctagcaaaccgagacttgaagcaccttcggtgcccttggctgcgccg
actctctccttgttcaaaagacaaacggcatcaacacaggaggatcagttgcgtttgttg
cgcgctcgcaaggagagtcagacaatgcgtatgccttacaagcgctacatggctattttg
ccgctcatgcaacagcagaaaatagagcagaccgctaaggagaacaatgagctgctcaaa
cggcgcctgtgccccgcagagcctgcgccagtaaacataaagttggaaagcactacaaaa
gtagatgaggatcccgtatataaattaccactgaaagaacagctgaaacgtaaacatcag
cctacagcggatcaacccagcttggctaaacgcaataaaaatgaagagaagcccagtgcg
tctatgtcaggcgcaaaaccaaaagttaagaatgagccaatggctgccattgaccaaacc
ccaaacgcagaggatagtgacgatgatgcagtgatcgaagtgcccatcgagaagagtcct
acggaaaatcccactcctgctctaagtaggcgccagcagaaacgccaagagaagaataag
cgctttaaggccaaagcacgcacgcaggcacagagctccaataaacccgtgcagctgcct
accaatactgcaacggcacaaaactttgactataagaatgtggactttcgacaatttcaa
ggcggcgctaaacgtgcacagagcacagagatcaaatctcaaatgcgcggcaagagtcga
cacaacaatcgcaacaataaacagtttaataaactgtttactttcagcaaaattaataaa
gagcgaaaaaagtaa
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