Diabrotica virgifera virgifera (western corn rootworm): 114326439
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Entry
114326439 CDS
T09922
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dvv
Diabrotica virgifera virgifera (western corn rootworm)
Pathway
dvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114326439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dvv03019
]
114326439
Messenger RNA biogenesis [BR:
dvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114326439
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114326439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
114326439
NCBI-ProteinID:
XP_028130611
UniProt:
A0A6P7F572
LinkDB
All DBs
Position
1:131393926..131464910
Genome browser
AA seq
2368 aa
AA seq
DB search
MNLDSLSFTLSQISYLIATLTKKNYKQVVGDITKLVSLHGLEADRHLLQCLFSSVDFSES
TNKISAPAPQNQALLEQCSSLLNKPSLLTALCYITDNPLINHKTLKLGPQFFHQLSKCLR
LSAVQEVVFAIALCHSSHTEARNLAQAHLRTTVPALVQSYIDTEGSSSQHEGGLHETTPE
VLHLIISAVLKNPKEVGLTNDNHTTFLETLQRDFPKDLVPVVLAPLVYPEHSELAPEMSS
EGPGLSGGMLETSLSDVVTELGYNFTSSVEECRNNLMKLGGRDISPAVVSRILAVMCRTH
SGLEDSISIQTPGSFNKGSDNRTSWNIDNLIQALKEIVPNFQWNSIVAELDHPEFIVKDR
QGLCLLINGLRQGLQTFGFHPETFPVDQIYKRWQNVEGQFSLIQNILKNPDVFCFVDYTY
APVAVDVLKTPPEQDSKELANWRSLNLVELLLSLSECGLYTHVQELFKIPVHSCPDVLVL
ALLQISGQVTLLRRDLLTNLIPIFLGNHPNSAIILHHAWHTQNINIKPIIMHAMAEWYVR
GECDQTRLSRILDVAQDLKALSSLLNAQSAQSYPFIIDLACLASRREYLKLEKWLSDKIN
EHGEAFVMACVKFLHRRVPQISKADESLGKVVPLPTETLTTMTLCLQRTMNNLSPECHDA
VMTTVNNCSLIIKSRQQQQPAILRSRGIDGGINPSVFAPLYNHSGVDSMQGLNTTLANMN
LGGPANSAFNLQGGLGPLVPSPGSPSRILNAGPSSSPFPIMPMSHQGPAGTSSSLVLGVN
QISNLSRMGPNTNIDKTRLPEYNLFPDVSSHVSKDIEDEANNYFQRIYNHPPNPTLSIEE
VLNMLKRFQDSHNKREKEVFNCMLKSLFEEYKFFPQYPDKELHVTAQLFGGIIERGIVAS
YVALGLALRFVLEALKKPEGSKMYYFGIAALDKFKTCLKQYHKYCEHVRAIPHFSDFPQH
LQEYVEFGLQGLEPPHKPDGPILPPSLAAMLAPPSAVTVYKTTTTASTVQTKVNTTPAGT
MSSRPSIANATNIDTLLVATEKEEKATAPPEPLQDKTAFIFNNLSQLNLKQKCDELKELV
SDEYYPWLAQYLVMKRASIEFNFHGLYSNFLDTLGINEILKLVTRETFRNIRVLLRSDKA
VANFSDRSLLKNLGHWLGLLTLARNKPILQIDLDLKSLLVEAYHKGQQELLYVVPFVAKV
LESCAKSKVFKSPNPWTIALMNVLAELHSEADLKLTLKFEIEVLCKHLDIDVSHLKPSLY
LKDPERIRKIEYQLSQPLKKEVLMQPSVVNQGGNLTDQELANIIPSQQTSSPVIQNNSTT
PTSALSAPPEPRFAYSDIQIPGMQSFQTHTVISPSILLFQTQPQLKALVRTSIERAVQEW
IGPVVDRSIKIALQTCEQLIRKDFALDPDENRMRLAAHYMVRTLTAGMAMITCREQLITA
ISTHLKQALLTNMVSPTVQQKEMIDQACSVVASDNMELGCAFIQKTAVEKAIPEIDKRLV
SEYELRKMARQEGRRYCDPIALTYQAERMPEPIRLKVGGISQSQMGVYEEFGQNIPGFVP
NERDATMLIQKQTPIEVQSHSSTPFPIPQNILPTDDIAILYEKLAIDVEQFVQLLGQAQA
LMSSSMVLIRDCLLHMSRNRDSTPPQAIVQKCVESLQDCLVPTLSNDNDPVTLRFKEIIV
RILKTLQDPRLYGQQWTNKLVTRCLTECRDDQLRYNLDAVDTLIKNGLVNVPQYDLALTQ
CMENGHNYMATTFATQLLQLYIVDDRNGQLVTESDLCNTIEILAKINTHSRPQPEGLGNI
MDALRQSEPSSFFGDRAPMGPTVHIHNGILQVRAPNYEDPPGLVEKTDHLLREWISFYHG
QNQGRDSTKAFSVFVHQMNVYGILKTDDLITRFFRLSTQLCVETVYRVLAEKSTTNVSLL
RPKCYQTLDAYVRLVALLVKHSGDANNTTTKVHLLNKVLGILAGCLMQDHDTRAIEFQQL
PYQRIFTMLFLELNAPEPVLEAINFHVLNAFCHTLHILRPTKAAGFCYAWLELVSHRVFM
GRMLASSPQQKCWPMYAQLLIDLFKYLAPFLRNAELAKPVTMLYRGTLRVLLVLLHDFPE
FLCDYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEISYGPRILTNL
AQMITPAQFKKDVDSYLKARAPVTFLSELRSNLQVSNEPGVRYNIPLMNALVLYVGTQAI
TYIRNKGHTPNMSTIAHSAHMDIYQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCT
LLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTYRFWQHEFVHCAP
EIEKLFESVARSCMVKSTAQAQEGDIQE
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgttgtctttcactttgtcacaaataagttatttgattgccacatta
actaaaaaaaactataagcaagtagtaggagacataactaaacttgtttctttgcatggt
ctggaggcggatcgtcacttgctccaatgtctgttttcatcagtggacttttcagagtct
acaaataaaatatcagctccagctccccaaaaccaagcattattggaacagtgctccagt
ttgttaaacaagccatcattgttaacagccctttgttatattacagacaatcctttgata
aatcacaagactttaaaacttggacctcaattcttccatcagttgagcaagtgccttcgc
ctctcagctgtccaggaagttgtttttgccattgctctttgccactcatctcacacagaa
gccagaaatctagcccaagctcacttaagaactacagtacctgccttagttcagtcatat
atcgatacagaaggaagtagcagtcaacacgaaggtggacttcacgaaacaactcctgaa
gtacttcacctcattatatctgctgttctaaaaaaccctaaggaagtaggtcttactaac
gacaaccatacaacatttcttgaaaccttacaacgagattttcccaaggatcttgtaccc
gtagtgcttgcgccattagtgtatccagaacatagtgaattggccccagaaatgtcatct
gaaggccccggtttatccgggggaatgcttgaaacatctttatcagatgtagtgactgaa
ttaggatataattttacgtcgtctgttgaagaatgccgcaacaacctcatgaaactgggt
ggcagagatatttcccccgcagtagtatctcgtatccttgctgttatgtgccgaacacac
agtggccttgaagactctatttccattcaaacaccaggatcttttaataaaggatctgat
aatagaacatcatggaacattgataacttaattcaagctcttaaagaaattgttcctaat
tttcagtggaatagtattgttgctgaactagatcatcctgagttcattgtaaaagatagg
caaggattgtgtctattaataaatggacttaggcaaggcttgcaaacatttggttttcac
ccagaaacatttccagtggatcagatatataaaagatggcaaaatgtggaaggacagttt
agtttaattcagaatatccttaaaaatccagatgtgttttgttttgtggactatacttac
gcacctgtggcagttgatgtgctaaaaactccacctgagcaagacagtaaagaattagca
aactggagatctttgaaccttgttgaacttttgttgagcctatcagaatgtgggttatat
acacatgttcaagaactgttcaaaataccagtacatagttgtccagatgtactagtttta
gcattacttcagatttctggccaagttactttactaagacgcgacttgctcactaacttg
atccccatatttttaggaaatcatcctaactctgccataattttacatcatgcatggcac
acacagaacatcaatattaaacccattattatgcatgctatggcagaatggtatgttagg
ggggaatgtgatcaaacaaggctgtccagaattcttgatgtagctcaggatttaaaagca
ctatcaagtcttttgaatgcacaatctgcccagtcatatcctttcattatagatttagct
tgcctagcttcacgaagggagtacttaaaattagaaaaatggctttctgataaaataaat
gaacatggagaggcttttgttatggcatgtgtaaaatttttacatagacgtgttccacag
atatcaaaagcagatgaatcgctaggcaaagttgttcccttgcctacagaaactttgact
acaatgacattatgtctgcaaaggactatgaacaatttaagtccagagtgtcacgatgct
gtaatgacaacagttaataactgttctttgattataaagtccagacaacaacagcaacct
gctatacttcgatcgagaggaatagatggaggaataaatccttcagtttttgctcctctc
tataaccattctggagttgattctatgcaaggacttaacacgacattggcaaatatgaac
ttaggtggtcccgcaaattctgcattcaacttacaaggtggattaggacctttggtacca
tcaccaggatctccctcaagaattttaaatgctggcccatcgagtagtccttttcccatt
atgccaatgtcacatcaaggccctgctggtacaagttcgtctctagtcctaggagtcaat
caaattagcaacttaagtaggatgggacccaatactaacatagacaagactagattgcca
gaatataacctgttcccggatgtttcttcacatgtttcgaaagacatagaagatgaagcc
aataattactttcagaggatttacaaccatccacctaatccaaccttgtcaattgaagaa
gtgttaaatatgttgaagaggtttcaagattctcataacaaaagagaaaaggaggtgttt
aactgtatgttgaaaagtctttttgaagagtacaaattttttccacaatatcctgataaa
gaattacatgtaacagcacaactatttggaggcataatcgaaagaggtatagtcgctagc
tatgtcgccctgggactggccttacggtttgtccttgaggctctcaaaaagccagagggt
tctaagatgtactattttggaatagcagctttagataaatttaaaacatgtttaaagcaa
tatcataaatactgtgaacacgttcgagcaattcctcacttcagtgattttcctcaacat
cttcaagagtacgtagaattcggattacaaggtttggaaccacctcataagccagacgga
ccaatattaccaccaagtctagcagccatgttagcgcctcctagtgctgtcactgtgtac
aagactactaccacggcaagtactgttcaaaccaaagtcaatactacaccagcaggtaca
atgagtagcagaccttccatagcaaatgctacaaatattgatacacttttggtagccact
gagaaagaagaaaaagccactgctccgcctgagcctttacaagacaaaactgcctttatt
tttaataatttaagtcaattgaatcttaaacaaaaatgcgatgagcttaaggaattagta
tctgatgaatattatccgtggcttgcacaatatcttgtaatgaaaagagcatctattgaa
tttaatttccatgggttgtattccaacttcctggatacactaggaataaatgaaattcta
aaattagtaacaagggaaacattcagaaatattagggttctcttaaggtctgacaaggca
gtagctaatttttctgacagatctcttttgaaaaacttgggccattggcttgggctttta
actctagccagaaacaagccgattttacaaatagaccttgatctgaagtcacttctagta
gaagcttaccataaaggacaacaggaacttttatatgtggtaccatttgtagctaaagtg
ctagagtcatgtgctaaaagtaaagttttcaaatctcccaatccatggacaatagcttta
atgaacgttttagcggaattgcactcagaagcagatcttaagctgactttaaagtttgaa
atagaagttttatgtaagcatttggatatagatgttagccatttgaagccttctctatac
cttaaagatccagaacgtatcagaaaaatcgaataccaactatcacaaccacttaagaaa
gaagttttgatgcaacctagtgttgtcaaccaaggaggtaatttaacggaccaggaatta
gcaaacatcattccaagtcaacaaaccagttctccagtcattcagaataatagtacaact
ccaacatcagctttgtcggcgcccccagagcctcgttttgcatactcagacattcaaata
cccggaatgcagtcatttcagacccacactgtcatctctccttcaattttgttatttcaa
acccagccacaacttaaagcacttgtgcgcacttccattgaaagggctgtgcaggagtgg
ataggaccagtagttgacaggtccattaaaatagcccttcaaacatgcgaacaactcata
aggaaggattttgcacttgatccagacgaaaaccgaatgcgactagccgcccattacatg
gtacgcaccctcacagctggtatggcgatgattacatgccgggaacaattgataacggct
atcagcacacatttaaaacaagcccttttaaccaatatggtgtcacctacggtccagcaa
aaagagatgatagatcaggcgtgtagtgtcgtcgccagtgataacatggagctgggttgt
gcttttatacagaaaactgccgtcgaaaaagctatacccgaaatcgataagagactcgtc
agcgaatatgaactcaggaaaatggctcggcaagaaggaagacgttactgtgatcccata
gctttaacttatcaagcagaaaggatgcccgagccaatacgactaaaagtaggaggtatt
tcacagagtcaaatgggcgtatatgaagaatttggacaaaacatcccggggtttgtaccg
aacgaacgtgatgctactatgctaatccaaaaacaaacacccatcgaggtccaatctcac
tcttcgactccatttccgattccacagaatatcttacccaccgacgatatagctatatta
tacgaaaagttggccatcgatgtagaacaatttgtgcaacttttagggcaagcacaggct
ctgatgagtagcagtatggtgcttattagggattgtctattgcatatgtcgaggaacagg
gactcaactcctccccaagctattgtacaaaagtgtgtagaaagcttgcaagattgcctt
gttccaactttaagtaatgacaatgacccagttactctccgttttaaagaaatcatagta
agaattctcaaaacccttcaagatccacgattatatggccaacaatggaccaacaaattg
gtaacgagatgtttaaccgaatgccgagacgatcaactacgttacaacctcgatgctgtc
gatacattaatcaaaaatggtttagtcaatgttccccagtacgatcttgcacttacacaa
tgtatggagaatggccataactacatggctaccacttttgctacgcagttactacagttg
tatatagtagacgatagaaacgggcaacttgttactgaaagtgatttgtgcaacacgatt
gagattttagccaaaattaacacccattctagaccacaaccagaaggattaggaaatatt
atggatgcattgagacagagcgaaccgagctcattttttggagaccgcgcgccaatggga
cccactgttcatatccataacggaatcctacaggtgagagcgccgaattatgaagatcct
ccaggtctagtagagaaaactgatcaccttcttcgagaatggatttctttttatcacggc
cagaaccagggtcgagattctaccaaagcttttagtgttttcgtccaccaaatgaacgtc
tacggcatcctaaagactgacgacttaattacgaggttttttcgactttcgacgcaactt
tgcgttgaaaccgtgtacagagtccttgcggaaaaatcgaccacaaatgtatcattattg
aggccgaagtgctatcaaaccttagacgcttacgtgagattggtggccttattggtgaag
cattcaggtgatgcaaataatacaaccaccaaagtgcatcttctaaataaggttcttggt
attttagcaggttgccttatgcaggaccatgacactcgtgctattgaatttcaacagttg
ccttatcagaggatattcactatgttgttcttggaactaaatgctccagaacccgtcctg
gaagccattaatttccacgttttgaatgctttttgtcatacattacacatcttacggcct
acgaaagcagcaggtttttgttacgcttggttagaactggtttctcaccgagtctttatg
ggaaggatgctagccagtagccctcagcaaaaatgttggccgatgtatgcccaactcctc
atcgaccttttcaaatatttggcgccgtttttgaggaatgcagagctggccaaaccagtt
acgatgttatatagaggaacactacgagtactgctcgtgttattacacgactttccagag
tttctatgtgattatcattatggattttgtgacgtaattccgcccaattgtattcaaatg
aggaacctcatcctctctgcgtttccaagaaacatgaggttgccagatccatttacacct
aacttaaaggtcgatatgctaccggaaatatcgtatgggccgagaatacttacaaattta
gcacagatgatcacacctgctcaatttaaaaaagatgtggattcgtatctgaaggcaagg
gcaccggttacgtttttgtcggaacttagaagtaacttacaggtttcaaacgaacctggt
gtgcgttacaatatcccgttaatgaacgccttagtactgtatgtaggcactcaagcgata
acttacatacggaacaagggccacacgccgaacatgtcgacaatagcacacagcgcccac
atggacatctaccaaaatctggctgtcgatctggacaccgaaggtcgctatttattcctt
aacgctatcgcgaaccaactgaggtatcccaacagccatacacattatttctcttgcact
ttgctctatttattcgccgaagccaatacagaggccattcaagagcaaatcacaagggta
ttattggaaaggctaattgtaaatagaccgcatccctgggggctactgattacctttatt
gaactcatcaaaaatcctacgtataggttttggcagcatgagttcgtccattgtgctcca
gagattgaaaaattattcgagtcagtcgcaagatcttgtatggtaaaatccacagcgcaa
gcgcaagaaggcgacatacaagagtga
DBGET
integrated database retrieval system
