Dyadobacter chenhuakuii: NFI80_20095
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Entry
NFI80_20095 CDS
T08460
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dyc
Dyadobacter chenhuakuii
Pathway
dyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NFI80_20095 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dyc03021
]
NFI80_20095 (rpoC)
03400 DNA repair and recombination proteins [BR:
dyc03400
]
NFI80_20095 (rpoC)
Enzymes [BR:
dyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NFI80_20095 (rpoC)
Transcription machinery [BR:
dyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NFI80_20095 (rpoC)
DNA repair and recombination proteins [BR:
dyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NFI80_20095 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
USJ30153
UniProt:
A0A9X1TSW3
LinkDB
All DBs
Position
4808837..4813159
Genome browser
AA seq
1440 aa
AA seq
DB search
MSFKKNKKLNSDFSRMTISLASPESILESSFGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQIIYYERYAVVQPGVKEEDGVGYLDFLTEDEYLDIIDKLPRENQMLPD
TDPNKFIAKMGADALEMLLNRIKLDELSYELRHQAATDTSQQRKAEALKRLKVVEAFRDA
NTRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASMLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRVSTDHYPII
GEGMIFYGPDEVIIAINEGKLSKHANIKCRLRVRNDDGTFETKMVDTVAGRILFNQAVPE
EVGYINELLTKKKLQQIIGLVFKLAGVARTAQFLDEIKELGFQMAFKGGLSMGLNDVMVP
DEKVKLIEQAKLDVENVWSNYLMGLITENERYNQVIDIWTRVNSRITETLMKQLETDQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNIAGGAGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVIETDCGSLRGIAISALKDNEDI
VEPLSERILGRVSVHDVFDPLSNEMILASGQEITEEIASYIDETSIETVEIRSVLTCETR
NGVCAKCYGRSLASAHMVNIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNISVEANIK
AKFDGVIGFEDLRLVQSVNSEGDEVTVVMGRSGEVKITNPETGQLLISNNVPYGAHLLVK
DGEKVQKGQELCTWDPYHAVILSEFTGVVSFDAIEEGITYREEFDEQTGFQESVIIETRD
KTKNPAIVVKGKSTLLKDQTEKGYNLPVGARLVVKAGTNIKAGQPLAKIPRVVGKTRDIT
GGLPRVTELFEARNPSNPATVSEIDGVVSYGGVKRGNREIHIESRDGTQRRYMVALSKHI
LVQDGDFVRAGDPLSDGAITPADILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIECI
VRQMMQKVEILDAGDTNFLEMQPVDRVVFREENDKILDLKVIEDAGSSETLKPGMIVSVR
RLRDENSSLKRRDLKLVTARDAQAAVAKPTLMGITQASLGTESFVSAASFQETTKVLSEA
AVRGKRDELKGLKENVIVGHLIPAGTGMRQYESLIVGSKEEFDALTESREKLSRKKKELV
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaaaaagaacaaaaaacttaatagtgatttttccagaatgacgatcagtctg
gcttcacctgagtctatccttgagagctcatttggtgaagtaacccagcctgaaaccatc
aactaccggacttacaagccggagatgggcggattattctgcgaaaggatcttcggtcct
gtgaaggactgggaatgtcattgtgggaaatacaaacgtatccgttacaaaggaatcatc
tgcgaccgttgcggtgtagaggttactgagaaaaaggtgcgtcgcgagcgtatgggccac
attgaactggtggttccagttgcgcacatctggtatttccgcagcttgccgaacaaaatc
ggttacctgctgggattatcgaccaagaaattggatcaaatcatttattacgagcgatat
gcagtcgttcagcctggtgttaaagaagaagatggcgtaggttatcttgacttcttgacc
gaagatgagtatctggatatcattgacaaattgcctcgcgaaaaccaaatgcttccggac
acggatccaaataagtttatcgcgaaaatgggtgctgatgcgcttgaaatgcttttgaac
agaattaaactggatgagctttcatacgaacttcgtcaccaggcagcaacggacacttcg
cagcaacgtaaagcagaagcattgaagcgtctgaaagttgtcgaagcattccgtgatgca
aatacacgtatcgaaaaccgtcctgagtggatggtgatcaagatggttccggtaattcca
ccagaacttcgtccgcttgtgcctttggatggtggtcgttttgcgacttccgatttgaat
gacctttatcgtcgtgttattattcgtaacaaccgtttgaagcgtctgatcgagatcaaa
gcacctgaggtgatcttgcgtaacgaaaaaaggatgttgcaggaagcggtagactcgctt
ttcgataacagccgtaaagtaaacgcggtgcgttcagaaggtaaccgtgcattgaaatca
ctttctgacatgctgaaaggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgt
gtcgattattctggtcgttcggtaatcgtcgttggacctgaattgaaattgcacgaatgc
ggtttgccaaaagatatggcggcagaattattcaagccgttcattatccgcaagctgatc
gagcgtggaattgttaaaactgtaaaatcagcgaagaagatcgtagatcgtaaggatcct
gtgatctgggatattttggaaaacgttttgaaaggacaccctgttctgcttaaccgtgct
ccaacattgcaccgtttgggtatccaggcattccagcctaagctgatcgaaggaaaagcg
atccagttgcacccattggtttgtactgcattcaacgctgactttgacggtgaccagatg
gccgttcacgtgccattgggtcaagaagccgttttggaagcttcaatgttgatgctttcg
tcacataacattcttaaccctgccaacggtgcgccaattacggttccatcacaagacatg
gttttgggtctgtattatgttacaaaaggccgcgtaagcacagatcattatccgattatc
ggagaaggaatgatcttctacggtcctgacgaagtgatcattgccatcaacgaaggcaaa
ttgtcaaaacatgcgaatatcaaatgccgcctgcgcgttcgtaacgacgacggaacattt
gaaacgaaaatggttgacactgttgccggacgtatccttttcaatcaggctgttcctgag
gaagtaggttacattaatgagttgctgactaagaaaaaattgcagcagatcatcggtttg
gtgttcaaattggctggtgttgcccgtacagctcagttcctggatgaaatcaaagaactt
ggtttccagatggccttcaaaggcggtttgtcaatgggattgaacgacgtaatggtgcca
gacgaaaaagtgaaactgatcgagcaagcgaaactggacgtggaaaacgtttggagcaac
tacttgatgggtcttatcactgaaaacgaacgttacaaccaagttatcgatatctggact
cgtgttaactcacgcattacagaaacgttgatgaagcaattggaaactgaccaaggcgga
ttcaactcaatttatatgatgatgcactcaggtgcacgtggttcgcgcgagcaaatccgt
cagttgggtggaatgaggggtcttatggccaagcctcagaaaaacatcgcgggtggtgca
ggtgaaatcatcgagaacccgatcctttccaactttaaagaaggtttggacgttcttgaa
tactttatctcaacacacggtgcacgtaaaggtcttgccgatacagccttgaaaacggct
gatgcgggttacctgacacgtcgtctgcatgacgttgcacaggatgttgttgtgatcgaa
acagactgcggatcccttcgtggaattgcaatctctgctttgaaagacaacgaagatatc
gttgagccgctttctgagcgtattttgggtcgtgtaagtgttcacgatgtatttgatcct
ttgtctaacgaaatgatcttggcttccggtcaggaaattacggaagagatcgcttcttac
attgatgagacgagcattgaaacagttgaaatccgttcggtattgacttgcgaaacgcgt
aatggtgtttgtgcgaaatgctacggacgttcattggcatctgcgcatatggttaacatt
ggtgaagctgtgggtgtaattgcatcgcagtccatcggtgagccgggaacgcagttgaca
cttcgtacattccacgtcggtggtacagcttctaacatttctgttgaagcaaacatcaag
gcgaaattcgacggtgtaattggttttgaagatcttcgtcttgttcagtctgttaactca
gaaggagatgaagtaacagtagtaatgggtcgttcaggagaggttaaaattactaatcct
gaaacaggtcaattgctgatctcaaacaacgttccttatggagcacaccttttggtaaaa
gacggtgagaaggttcagaaaggacaagaactttgtacttgggatccatatcacgcagta
atcctttcggaattcaccggagtagtatctttcgatgcaattgaagaaggcattacatat
cgtgaagaatttgatgagcaaactggtttccaggaatctgtgatcattgaaacacgtgat
aaaaccaaaaacccggctatcgtggtaaaaggtaagtctacgttgttgaaagatcagaca
gaaaaaggttataaccttcctgttggagcacgtttggtggtgaaagccggaacgaacatt
aaggcaggtcagccattggcgaaaatcccacgtgtagttggtaaaacacgcgacattacg
ggaggtttgccacgtgtaactgaacttttcgaagctcgtaacccgtctaacccagcaact
gtttctgaaatcgatggtgtagtttcttatggaggtgtgaaacgcggtaaccgtgaaatt
catatcgaatcaagagacggaacacaacgtcgttacatggttgccctttcgaaacacatt
ctggttcaggatggtgacttcgtaagagcaggagatccattatccgacggagcgatcaca
ccagctgatatcctttctatcaaaggaccaacagcggttcaggaatatcttgtaaatgaa
attcaggaagtataccgtctgcaaggtgtgaagatcaacgataagcatatcgaatgtatc
gtacgccaaatgatgcagaaagtagagatcctggatgcaggtgataccaacttccttgaa
atgcaaccggttgaccgtgttgtgttccgtgaagaaaatgataagatcctggatttgaaa
gtgattgaagacgctggtagctctgagactctgaagccgggtatgatcgtttcagttcgt
cgtttgcgtgatgaaaattcaagcttgaaacgtcgtgacttgaaactggttactgcgcgt
gatgcgcaggcagctgttgcgaaacctactttgatgggtatcacacaagcttcattgggt
actgaaagtttcgtttctgcggcctcgttccaggaaacaaccaaagtattgagcgaagcg
gctgttcgtggaaaacgcgacgaactgaaaggcttgaaagaaaacgtgatcgtcggtcac
ttgatcccagccggaacaggaatgcgtcaatacgaaagcctgatcgttggatcaaaagaa
gagttcgatgctttgactgaatctcgtgagaagctttctcgcaagaaaaaggaattagta
tag
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integrated database retrieval system
