Dickeya zeae: W909_02955
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Entry
W909_02955 CDS
T03567
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dzc
Dickeya zeae
Pathway
dzc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dzc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
W909_02955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dzc03021
]
W909_02955
Transcription machinery [BR:
dzc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
W909_02955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
DUF2610
HTH_SUN2
HAP1_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJC65119
LinkDB
All DBs
Position
complement(628981..630816)
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AA seq
611 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDLAPNAAP
ENAELADDGIDDDDDENEEDEDDSDDDNSIDPELARQKFTELRDQYEATRLSIKAHGRSH
PSAIEEINKLSEVFKQFRLVPKQFDLLVNNMRSMMDRVRAQERQIMKLCVELCKMPKKNF
VTLFTGNETNSKWFEAALSMGKPWCEKLRDVEDDVHRSLQKLQQIEEETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRS
ATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEVLRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgccgaggtcaatgaccatctgccggaagatatcatcgactccgatcag
atcgaagacatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgccgatgatctcatgctggctgagaataccgccgacgaagacgctgcggaagccgca
gcacaggtattgtccagcgtcgaatccgagattggccgcacgaccgatcccgttcgcatg
tacatgcgtgaaatgggcaccgttgaactgctgacccgcgaaggggaaatcgatatcgcg
aagcgaatcgaagacgggatcaatcaggttcagtgctctgttgccgagtatccagaagcg
atcacctatctgttggaacagtacgatcgcgttgaagccggagaaagccgcctgtccgat
ctgataaccggctttgtcgatccgaatgccgaagaagatttggcaccgaacgccgcacct
gaaaacgccgaactggctgatgacggtatcgacgacgacgacgacgaaaacgaagaagac
gaagacgattccgacgatgacaacagcatcgacccggagctggcgcgtcagaaattcacc
gaactgcgcgatcagtacgaagcgacccgcctcagcatcaaggcgcatggccgcagccat
ccgtcggctattgaagaaatcaacaaactgtctgaggtgttcaagcagttccgtctggtg
ccaaaacagttcgacctgctggtaaataacatgcgttccatgatggatcgcgtgcgtgct
caggaacgccagatcatgaagctgtgcgttgagctgtgcaaaatgccgaagaaaaacttt
gtcacgctgtttaccggcaacgaaaccaacagcaagtggttcgaagccgcactgtccatg
ggcaaaccctggtgtgaaaaactgcgcgacgttgaagacgacgtacatcgcagcctgcaa
aaactgcaacagatcgaagaagaaaccggcctgactatcgagcaggtaaaagacatcaac
cgtcgcatgtccatcggcgaagccaaggcgcgtcgcgccaagaaagagatggtggaagcg
aacctgcgtctggttatctcgatagccaagaaatacaccaaccgtggtttgcagttcctc
gacctgattcaggaaggcaacatcggcctgatgaaagcggtagacaagtttgaataccgc
cgtggctataaattctccacctacgccacctggtggatccgtcaggcgatcacccgttct
atcgcggatcaggcgcgcaccatccgtatcccggtgcatatgattgagaccatcaacaaa
ctcaaccgtatttcgcgccagatgttgcaggaaatgggtcgcgagccgacgccggaagaa
ctggctgaacgcatgctgatgccggaagacaagatccgcaaagtattgaagatcgccaaa
gagcctatctcgatggaaactccgatcggtgatgatgaagattcgcatctgggcgatttc
atcgaagataccacgctggagctgccgctggactccgccacctcggaaagtctgcgttca
gccacccatgacgtactggctggcctgaccgcacgtgaagccaaagtgctgcgcatgcgt
tttggtatcgacatgaataccgaccacacgctggaagaagtcggcaaacagttcgacgtc
acccgcgaacgtatccgtcagattgaagccaaagcgttgcgtaaattgcgccacccgagc
cgttctgaagtactgcgtagcttcctggatgactaa
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