Candidatus Electrothrix aestuarii: Q3M24_01120
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Entry
Q3M24_01120 CDS
T10293
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q3M24_01120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaj03021
]
Q3M24_01120 (rpoB)
03400 DNA repair and recombination proteins [BR:
eaj03400
]
Q3M24_01120 (rpoB)
Enzymes [BR:
eaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q3M24_01120 (rpoB)
Transcription machinery [BR:
eaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q3M24_01120 (rpoB)
DNA repair and recombination proteins [BR:
eaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q3M24_01120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XCN73386
UniProt:
A0AAU8LVX4
LinkDB
All DBs
Position
complement(217416..221504)
Genome browser
AA seq
1362 aa
AA seq
DB search
MKRVRKGFAKTRKLVEPPHLIAMQRHSYDRFLQMNVDPSQREDIGLQAIFKNIFPISDFN
GLCTLEFVNYSFGEHKYTVSECIERGMTYEVPVKITVRLITFEVDEETGVQTVRDIKEQE
VFLGSLPLMTDDGVFIVNGTERVIVNQLQRSPGLFYTHDNGKSHVSNKRLYSARIIPVRG
SWLDFEFDIKDILHVRIDRRRKLPVTTLLRALGYSDEELLRKFYPIDTLQTAENGFRILF
QPETFIGQRLTADLVSPSDGEVLGKKGRKISKALAKRIAKAGIEYIEVSAEELLGRVLVS
DLLNPETGEVMAQCNDSLTEELIDAIQANNISSFELLFIDNVNVSESFRKTLAVDKVKSV
DQALVEIYRRLRPSSPPTVEIAQEFFNKLFYDPATYDLSVVGRYKINSKLGLDTPIENCT
LTKEDILLSVKHLVRLKDELRDGDDIDHLGNRRVRTVGELCENQYRMGLVRMERAIKERM
NLQEIETLMPHDLVNPKPVTSAIKEFFATSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT
RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLATYAEVNAYGFIETPYRLVKDRQV
SEEIKHFTAIQEQGQVVAPANIHVAEDGTITDDVLIARMEGEVVTVSSDEVTTMDVAPNQ
LVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKPASPLVGTGVEKNLAQDSGACLLAA
GEGIVEEVDANRVVIRYDEPGIDGFDTGIGVYRLSKYKKTNQNTCFNQKPLVLPGERVKK
GDVLADGPSTEMGELALGKNVTIAFMPWRGYNFEDSILINERLLKEDTFTSVHIEIFDVV
ARDTKLGKEEITRDIPNIGDEALRNLDESGIVRIGAEIRAGDMLVGKVTPKGETMLSPEE
KLLRAIFGEKAGDVKDTSLRVPPGVEGVVIDAKVFSRKGVDKDERSLMIEEQEVSRLNRD
MEDELSSLKNGVRNKLCDLIVGRTAKSDILDIEGNVTLALGKKITEETLNAVEFEKLRGL
DFSERAKYEDDLEDVFNNYSRQAQAVRERYEGIVGRMEKGDDLPPGVVKMVKIYVATKRK
LAVGDKMAGRHGNKGVVSRLLPEEDMPFFEDGTTVDVVLNPLGVPSRMNVGQVLECHLGF
AAKRLGEQIQRLAKNFEVEQVKDRLQTIYSEEEYKEFTAGLSDDQLIDKMRKYGHGLHMA
TPVFDGATEAEIRNLLIEAGVDEVGQSTLYDGLTGDKFDNKVTVGVMYMLKLHHLVDNKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMESYGAAYTLKEFLTVKSDDVEGRTS
MYEKIVKGNNFLDAGLPESFHVLVKELKGLCLDVELLSGDDE
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagagtacgcaagggatttgccaaaacacgcaagcttgtagaaccaccgcatctt
attgctatgcagcggcactcctatgaccgttttctgcagatgaatgttgatccgtctcag
cgagaagatatcggcctgcaggcgatttttaaaaatatttttcccataagtgattttaac
ggactgtgtaccctggagttcgtgaactattcttttggtgaacataagtacactgtctct
gaatgtattgagcgagggatgacctatgaagtccctgttaaaataacagttcgcttgatt
acctttgaagttgacgaagagactggtgtgcagactgtccgtgacatcaaggaacaagag
gtttttcttggatctcttcctttgatgaccgatgacggtgttttcatagtaaacggaaca
gagcgtgttattgtcaaccagctgcaacgctctccggggcttttttatacccatgataac
gggaagtcccatgtctcaaataaacgtctgtactctgcccgtattattccggtgcgtggg
tcctggcttgattttgagtttgacataaaagatattcttcacgtccgcattgaccggcgg
cgtaagcttcctgtcactactttactcagggcgcttggctactctgatgaggaacttctg
cgcaagttttatcctattgataccttgcagactgctgagaacggtttcaggattctcttt
cagcccgagacctttattggtcaacgcctgacagcagatctggtgagccccagtgatggc
gaagtcctcggcaaaaaaggacggaaaatttccaaagccttggcaaaacgtattgcaaaa
gctggtatagagtacatagaagtgagtgctgaggaacttcttggccgggtactggtttct
gatttgcttaatcctgaaaccggtgaggtcatggcgcagtgtaatgactcgctgaccgaa
gaactgattgacgctattcaggcgaataatatcagcagctttgaactcctctttattgat
aatgtgaatgtttctgaatccttcagaaaaacattagctgttgataaggtgaagagtgtg
gatcaggcactggttgaaatttaccgtcgtctcaggccatccagccctccaactgttgag
attgcgcaagagttttttaataagctcttttacgatccggcaacctatgatctctctgtt
gttggtcgctataaaattaactccaagcttggcttggacactcccatcgagaactgtacc
ctcaccaaggaagatattcttctcagtgtgaagcatctggtacgcttgaaggatgagcta
cgcgatggagatgatattgatcacttgggtaaccgacgtgtccgcaccgtaggtgagctt
tgtgagaaccagtaccgtatgggactggtgcgcatggaacgggcgattaaagagcgcatg
aatctgcaggaaattgagaccctgatgcctcatgatctggttaacccgaaacctgtgacc
tcagcaattaaagagttcttcgctacttcgcagctttcccagttcatggatcagaccaac
ccgctttctgaggttactcataagcgacgtctgtcagccttgggacctggtggtttgacc
cgcgagcgcgctggctttgaggtgcgcgacgttcatcccacccattacgggcgtatttgt
ccggttgagactcctgagggaccgaatattggtcttattgtctccttggccacctatgcc
gaagtaaatgcctatggctttattgagactccctaccgtttggttaaagaccgtcaggtt
tcagaagaaattaagcatttcaccgctatccaagagcaaggtcaggttgtcgcacctgcg
aatattcacgttgcagaagatgggactatcactgacgatgtgctgattgctcgtatggag
ggggaggttgtcactgtttcctcagatgaagtaacaactatggatgtggcaccaaatcag
ctggtatcggtggcagcctctctgattcccttcctggaaaacgatgatgcgaaccgcgct
ctgatgggttccaacatgcaacgtcaggcggttcctctgctgaagccagcctcaccactg
gttggtactggtgttgaaaaaaatttggcccaggattctggagcctgtctgttggctgct
ggcgaggggattgttgaggaggttgatgccaatcgtgtagtgattcgctatgacgagccg
ggaattgatggctttgataccggaattggtgtgtaccgtctttctaagtataaaaagacc
aaccagaatacctgctttaaccagaagcccttggttctgcccggtgagcgggtgaaaaaa
ggtgatgtcctggctgatggtccttccacagagatgggcgagttggctctgggtaaaaat
gtgaccatcgctttcatgccgtggcgtggatataactttgaggactccattcttatcaat
gagcggctccttaaagaggataccttcacctcagttcacattgaaatcttcgacgtagtt
gctcgtgacaccaagcttggtaaggaagagattacccgcgacattcctaatatcggtgat
gaggctctgcgcaatctggatgagtccggtattgttcgcatcggggctgagattcgtgcc
ggggatatgctggtcggtaaggttacccccaaaggcgagactatgctctcacctgaggaa
aaattgctgcgtgctatctttggtgagaaggccggtgatgtcaaagatacctctttgcgt
gttccgcctggagttgagggcgtagttattgatgccaaggttttctcccgcaaaggcgtc
gacaaagacgagcgaagccttatgattgaggagcaggaggtcagccgtctgaatcgggat
atggaggatgagctcagcagtctgaaaaacggtgttcgcaataaactctgcgacctgatt
gttggtcgaaccgcaaaatcagacatccttgatattgaaggtaatgtgacccttgcgctt
ggtaagaaaattacagaggaaaccctgaacgctgttgagtttgagaagcttcgcggtctt
gatttttctgagcgggcaaaatacgaggatgatctggaggatgtctttaataattactcc
cgtcaggctcaagctgttcgtgagcgctatgagggcatagtcggcagaatggagaaaggt
gatgatctgcctccaggtgtagtcaagatggtcaaaatctatgttgccaccaagcgtaag
ctggctgtgggggataagatggctggtcgtcacggaaacaaaggtgttgtttcccgcttg
ctgcctgaagaggacatgccgttcttcgaggatggaaccaccgttgacgtggtcctgaac
cctctgggtgttccctctcgcatgaacgtgggtcaggtactggagtgtcatctgggtttt
gctgctaagcgtctgggtgagcaaattcagaggctcgcgaaaaactttgaggttgagcag
gtcaaagatcgtctccagaccatatattctgaagaggaatacaaggaattcacagcgggg
ctttcggatgaccagctgatcgataagatgcgcaaatacggtcacggactccacatggcc
acgccggttttcgacggtgccacagaggctgagatccgcaatctgcttattgaggctgga
gtggatgaggtggggcagtccacattgtatgatggtcttaccggagataagtttgataac
aaggtgacagtcggtgttatgtacatgcttaagctgcaccatctggtggacaataagatt
catgcccgctccacaggaccgtactctctggttacgcagcagccgctgggtggtaaagcc
cagtttggtggtcagcgtctgggtgagatggaggtttgggctatggagtcctacggtgcc
gcttataccttgaaggaattcctgaccgtcaaatccgatgacgtagaaggaagaacctca
atgtatgaaaagattgtcaagggcaacaatttccttgatgccgggttgccggagtccttc
catgttcttgtgaaagaattgaaaggtctctgtctggatgttgagctgctctcaggagat
gacgagtaa
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