Exiguobacterium alkaliphilum: KB235_02285
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Entry
KB235_02285 CDS
T07307
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KB235_02285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eap03021
]
KB235_02285 (rpoB)
03400 DNA repair and recombination proteins [BR:
eap03400
]
KB235_02285 (rpoB)
Enzymes [BR:
eap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KB235_02285 (rpoB)
Transcription machinery [BR:
eap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KB235_02285 (rpoB)
DNA repair and recombination proteins [BR:
eap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KB235_02285 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QUE87732
LinkDB
All DBs
Position
437045..440593
Genome browser
AA seq
1182 aa
AA seq
DB search
MTGQLVQYGRHRQRRSFARISEVLELPNLIEIQTASYEWFLREGLKEMFTDISPISDFTG
NLVLEFIDYSLSEPKYSIDESKERDVTYSAPLRVKVRLQNKETGELKEQEVFMGDFPLMT
ESGTFIINGAERVIVSQLVRSPSVYYNSKLDKNGKRGFGATVIPNRGAWLELETDAKDIV
YVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYLRNTLEKDNTESTEKALIEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKMNKKLHLKNRLFGQKLAETLVDPETG
EVIAEAGTVLDRRNLDRVLPHLENGLGYMDAEPTGGVAEGEPFGLQSIKVISPDDPDGER
ILNIIGNGNIDRSVKHITPADIIASINYFFNLLHEVGTTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIASLKEFFGSSQLSQFMDQTNPLAE
LTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNE
YGFIEAPYRRVDPETGLVTDEIQYMTADEEDLYVVAQANMPLTEDGHFADAQVLCRFRGQ
NLSVEPSRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLQPDSPIIG
TGMEYVSAKDSGAAIIAKFPGVVERVTAREILVRRTSDVNGSEVSGDLDRYKLQKYVRSN
QGTCYNQKPIIAAGDRVEKGEILADGPSMDMGELALGRNVVVAFMTWDGYNYEDAIIMSE
RLVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGDDALRNLDDRGIIRIGAEVKDG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPNGGDGIILDVKVFDRENGD
ELSPGVNQMVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYMPDGTPIDIMLNP
LGVPSRMNIGQVLELHLGMAAKKLGIKVATPVFDGAREEDVWATIEEAGMDKDAKTRLYD
GRTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDTVGRVKAYEAIVKGESVPKAGVPESFRVLIKELQALG
MEVKMMSADDEEVEMKDEDDDNIPNATSALEQVVQPTVTEEE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgactggtcaacttgttcagtacggtcgtcaccgtcagagaagaagctttgcccgtatc
agtgaggtattagagcttccgaatttgattgaaattcaaactgcttcgtatgagtggttc
ttgcgtgaaggattgaaagagatgtttacggacatttcgccaatctctgacttcacagga
aacctcgtactcgagttcatcgattactcgctcagcgagccgaagtactcgatcgatgag
tcgaaggagcgagacgttacttactctgcgccacttcgcgtaaaagtacgtctgcaaaac
aaagaaacaggtgaattgaaagagcaagaagtgttcatgggtgatttcccgctcatgaca
gaatcaggaacgtttatcattaacggcgccgagcgcgtcatcgtttctcagcttgttcgt
tcaccgagcgtttactacaactcgaaactcgataaaaatggtaagcgtggtttcggtgcg
acagtcatcccgaaccgtggtgcatggctcgaactcgaaacagatgccaaagatatcgtg
tatgtccgtatcgaccgtacccgtaaaatcccggtaacggtgttgttgcgtgcgctcgga
ttcggcacggaccaagaaattatcgaccttttaggcgacgacgaatatcttcgtaacacc
cttgaaaaagataacaccgagtcgacagagaaagcgttgattgagatttatgagcgtctc
cgccctggtgagccaccaacggttgagaacgcgaaatcacttctcgtctcacgtttcttc
gacccgaaacgctatgacctcgcaaacgttggtcgctataagatgaacaaaaagcttcat
ctaaagaatcgcttgttcggacagaagttggcggaaacgctcgttgacccggaaacaggc
gaagtgatcgcggaagctggcacggtacttgaccgtcgtaacttagatcgtgttcttcca
cacttggagaacggtcttggctacatggacgcagagccgactggcggcgtcgcggaaggt
gaaccgttcggtcttcagtcgattaaagtcatctcaccggatgacccagacggagagcgt
attttgaacattatcggtaacggcaatatcgaccgtagcgtgaaacatatcacaccggcc
gatatcatcgcatcgatcaactacttcttcaacttacttcacgaagtcggaacaacagat
gacatcgaccacttaggaaaccgtcgtcttcgttcagtcggagagcttctccaaaaccaa
ttccgcatcggtctttcgcggatggaacgtgtcgtaaaagaacggatgtcgattcaagac
caaaacgcgatcacacctcaggcgctcatcaacatccgcccggtgattgcatcactgaaa
gagttcttcggtagctcgcagttgtcacagttcatggaccaaacgaacccgctcgcagaa
ttgacgcacaagcgtcgtctgtctgcacttggaccgggtggtttgacgcgtgagcgtgcc
ggcttcgaagttcgagacgttcactattcgcactacggtcggatgtgtccaatcgaaaca
ccagaaggaccaaacatcggactcatcaactcactttcgtcttatgcgaaagtaaacgag
tacgggttcatcgaagcgccgtaccgtcgtgttgacccggaaactggtctcgtcacagac
gagattcaatatatgacggcggacgaagaagatctctacgtcgtcgcccaggcgaacatg
ccgctcacggaagacggtcactttgccgacgcacaagtcctttgccgcttccgcggacaa
aacttgtcagttgagccgagccgagtcgattacatggacgtttcaccgaaacaggttgtt
tctgccgcaacggcatgtatcccgttccttgagaacgatgactcgaaccgtgccctcatg
ggagcgaacatgcaacgtcaagctgtaccacttctccaaccagattcaccgattatcggg
actggaatggagtacgtgtcagcgaaagactctggagccgcgattatcgccaagttccca
ggtgtcgtcgagcgtgtcacagcacgtgaaatcttggtccgtcgcacgtctgacgtgaac
gggtctgaagtttcaggtgacctcgaccgctacaaacttcaaaaatatgtccgctcgaac
caagggacatgctacaaccagaagccaatcatcgctgctggcgaccgtgtcgaaaaagga
gaaatccttgctgacggtccgtcgatggatatgggtgagctcgcgctcggccgtaacgtc
gtcgtcgccttcatgacatgggacggttacaactatgaggatgcgatcatcatgagtgag
cgtctcgtgaaagatgatgtgtacacgtcgattcatatcgaagagtacgaatcagagtca
cgcgatacgaaactcggacctgaggaaatcacacgtgatattccaaacgtcggtgatgac
gcacttcgcaatttggacgatcgtgggatcatccgcatcggtgcggaagtcaaggatggc
gacatcctcgtcggtaaagtaacgcctaaaggtgtgacggaattgacggcggaagagcgt
ctcttgcatgcgatcttcggtgagaaggcacgtgaagtccgtgatacgtcactccgtgta
ccaaacggtggcgacggcatcatcttggacgtcaaagtgttcgatcgtgaaaacggtgac
gaactctcaccaggcgtgaaccaaatggttcgtgtctacatcgttcaaaagcgtaagatt
cacgaaggggataaaatggcgggacgtcacggtaacaaaggtgttatctcgcgcattctc
ccagaagaagatatgccatacatgccagacggcacaccaattgacatcatgcttaaccca
cttggtgttccatcacgtatgaacatcggtcaggtactcgaactccaccttgggatggcg
gcgaagaagctcggcatcaaagtggcgacacctgtattcgatggtgcgcgtgaggaagac
gtatgggcaacgattgaagaagctggaatggacaaggatgccaagactcgtctctacgac
ggtcgtactggtgaaccgttcgataaccgcgtctcggtcggtgtcatgtacatgatcaaa
ctcgcgcacatggttgatgataaacttcacgctcgttcgactggaccatactcactcgtc
acgcaacaaccgctcggtggtaaagcacagttcggtggacagcgcttcggtgagatggaa
gtttgggcacttgaagcgtacggcgcagcctacacgctccaagaaatcttgacaatcaag
tcggatgacacggtcggtcgtgtgaaagcatacgaagcgatcgtgaaaggcgagagcgtt
ccgaaagcgggcgttcctgaatcgttccgcgtcttgattaaagagcttcaagcactcggt
atggaagtcaagatgatgtctgcggacgatgaagaagtcgaaatgaaagatgaagatgac
gacaacatcccgaacgcaacatcggcgttagaacaagtcgttcaaccgactgttacggaa
gaggaataa
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