Erwinia billingiae: EbC_02600
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Entry
EbC_02600 CDS
T01270
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta\' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ebi
Erwinia billingiae
Pathway
ebi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EbC_02600 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebi03021
]
EbC_02600 (rpoC)
03400 DNA repair and recombination proteins [BR:
ebi03400
]
EbC_02600 (rpoC)
Enzymes [BR:
ebi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EbC_02600 (rpoC)
Transcription machinery [BR:
ebi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EbC_02600 (rpoC)
DNA repair and recombination proteins [BR:
ebi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EbC_02600 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAX57791
UniProt:
D8MKY5
LinkDB
All DBs
Position
302744..306964
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFSAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEQDEWVAKTSIIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE
VAEIQQQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEVVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILLPRNTLLHEQQCDLLEEHSVDSLKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
INAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDDLTGLSSLVILDSAERTAGGKDLRPALKI
VDANGNDVMIPGSDMPAQYFLPGKAIVQLEDGIKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGSDHYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSADFLDGEQVEFSRVKIANRELEANGKIAATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGETPV
VPQVTADEASASLAELLNASMGGKDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaagaccgaagagtttagtgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaaccagaacgtgacgggcttttctgtgcgcgt
attttcgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgtggcgttgaagttacacagaccaaggttcgccgtgag
cgcatgggccacattgagttggcatcacctactgcgcacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccactgcgtgacatcgagcgcgtgctgtac
ttcgaatcatacgttgtggttgaaggcggcatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggagcaggaatgcgagacg
ctgcgtgaagagctgaccgaaaccaactccgaaaccaaacgcaaaaaactgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgcctgtactgccaccggatctgcgtccgctggtaccgctggacggcggtcgtttc
gctacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggtcgatgcgctgttggataacggccgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactctggtcgttcggttatcaccgtcggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggagctgttcaaaccgttt
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgccaagaaaatg
gttgagcgtgaagaagctatcgtttgggatatcctcgacgaagtgatccgcgaacacccg
gtcctgctgaaccgtgcaccaactctgcaccgtctgggcatccaggcatttgagccagta
ctgatcgaaggtaaagctatccagctgcacccgttggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtctccagcgaacggtgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttaccgcgccggt
ctggcctctctgcacgctcgtgtgaaagtccgtatcaccgagcacgaaaagaacgagcag
gatgagtgggttgctaaaaccagcatcattgataccaccattggtcgcgccattctctgg
atgatcgtgcctaaaggtttgccgtactctatcgtcaaccaggcgctgggcaaaaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcttgaagccgaccgttatcttt
gcggaccagaccatgtacaccggttttgcctatgcagcgcgctcaggtgcgtcagtaggt
atcgacgacatggtcatcccagagaagaaagtggaaatcatcaccgaagcggaagcagaa
gtggctgagatccagcagcagttccagtctggtctggttaccgctggcgaacgctataac
aaagtgatcgatatctgggctgcggccaacgaacgcgttgctaaagcgatgatggaaaac
ctgtctaccgaagtggttatcaaccgtgacggtgaagaagagcgtcaggtttccttcaac
agcatctttatgatggctgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgagacgccaattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcacgt
aaaggtcttgcggataccgcactgaaaacagctaactccggttacctgacccgtcgtctg
gttgacgtggcacaggatctggttgtcactgaagacgattgtggtacccacgaaggcatc
atgatgaccccggttatcgagggtggtgatgttaaagagccactgcgtgagcgtgttctg
ggtcgtgtgacggctgaagatgtgatcaagccgggtactgctgacattctgctgccacgc
aacaccctgctgcacgaacagcagtgtgacctgttggaagagcactctgttgacagcctg
aaagtccgttcggtagtaggttgcgaaactgacttcggtgtgtgtgcacactgttatgga
cgcgatctggcacgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaagaacaaaggtacgctgaaactg
atcaatgccaagtcggtaaccaactccgctggcaagctggtgatcacctcgcgtaacgtt
gaactgaaaatgatcgacgaatttggtcgtaccaaagagagctataaagttccttacggt
tcaaccatggcgaaaggcgacggcgagcaggttgcagcgggcgagaccgtagcaaactgg
gatccgcacaccatgccagtgatcaccgaagtgagcggtttcattcgcttcactgacatg
atcgacggccagaccattacccgtcagacagatgaccttaccggtctttcttctctggtg
atcctggacagtgctgaacgtactgccggtggtaaagatctgcgtccagcgctgaaaatt
gttgatgcgaacggcaacgatgtgatgatcccaggctccgatatgcctgctcagtacttc
ctgccgggtaaagcaattgtgcagctggaagatggtatcaagatcagttctggtgacacc
ctggcacgtgtaccgcaggaatctggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcccgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccgatt
gatggcagcgatcattacgaagagatgatcccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgttgaacgtggtgatgttgtttccgatggccctgagtctccacatgacatt
ctgcgtctgcgtggcgtgcatgcggtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagtcatcgtgcgtcagatg
ttgcgtaaagcaaccatcgcaagtgcaggaagtgcagacttcctggacggtgagcaggtt
gagttctcacgcgttaaaattgctaaccgtgagctcgaagccaacggcaaaatcgcagcg
accttcgcacgcgatctgctgggtatcaccaaagcgtctctggcgaccgagtccttcatc
tctgcggcctcgttccaggaaacgacgcgcgtactgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcagctggcgaaacgccggtt
gttcctcaggtgactgcggacgaagcttctgccagcctggcagagttgctgaacgcgagc
atgggcggcaaagacgattaa
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