Empedobacter brevis: F0358_02515
Help
Entry
F0358_02515 CDS
T06196
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ebv
Empedobacter brevis
Pathway
ebv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F0358_02515 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebv03021
]
F0358_02515 (rpoB)
03400 DNA repair and recombination proteins [BR:
ebv03400
]
F0358_02515 (rpoB)
Enzymes [BR:
ebv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F0358_02515 (rpoB)
Transcription machinery [BR:
ebv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F0358_02515 (rpoB)
DNA repair and recombination proteins [BR:
ebv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F0358_02515 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QES91672
LinkDB
All DBs
Position
complement(522990..526832)
Genome browser
AA seq
1280 aa
AA seq
DB search
MATKATLSNSTEKKERLSFSSAKAVAQFPDFLDIQIKSFEDFFQLETRPDQRKNEGLYRT
FAENFPITDTRNQFVLEFLDYFVDPPRYTIDECIERGLTYSVPLKARLKLYCTDEEHEDF
ETVVQDVYLGTIPYMSPSGSFIINGAERVIVSQLHRSPGVFFGQSFHANGTKLYSSRIIP
FKGSWIEFATDINSVMYAYIDRKKKLPLTTLLRAIGYERDKDILEIFDLAEEVKVNKANL
KKVVGRKLAARVLNTWHEDFVDEDTGEVVSIERNEIILDRETILEKDHIDQIVDSGVKTI
LLHKEDINSADYGIIHNTLQKDPTNTEKEAVEYIYRQLRNAEPPDEETARGIIDKLFFSD
QRYSLGEVGRYRLNKKLGLSISEDIQVLTREDIISIIKYLIELINSKAEVDDIDHLSNRR
VRTVGEQMASQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLS
QFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLI
SSLCVFAKVNNLGFIETPYRKVEEGKVDVESAPIYLTAEEEESKVIAQANIDMEDDGTIA
TERVTAREDGDFPVVTPSEVDLIDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAV
PLLKPQAPIVGTGLEKQVAKDSRILVNAEREGTVTYVDADIITIKYDRSEDEELVSFDTA
EKTYNLTKFRKTNQGTTITLKPIVKIGDRVEKGQVLSEGYATEGGELAIGRNMVVAFMPW
QGYNFEDAIVISEKAVREDWFTSIHIDEYSLDVRDTKLGMEELTSDIPNVSEEATKDLDE
NGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGV
VIDKKLFSRSIKDKRKRSQDKAIIDSVEAEYDVKFNELREILLEKLYVLLNGKTSQGIYN
DLNEEVIKKGVKYTQKILSNVEDFLNLTGTESLWTTDEDKNELVKELLHNYKIKYNDLQG
ALNRERFTISVGDELPAGIVKLAKIYIAKKRKLRVGDKMAGRHGNKGIVARIVRDEDMPF
LEDGTPVNIVLNPLGVPSRMNIGQIYETVLGWAGLKMGQKFATPIFDGAEIADIDRITEE
AGIPKHGTTYLYDGNTGERFDQKATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGG
KAQFGGQRFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIVKGEPMPEPGIPE
SFNVLLHELQGLGLDINLEE
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
ttggccactaaagcaacattaagcaactcgactgagaaaaaagaaagattgagcttttca
tctgcaaaagcagtcgctcagttcccagatttccttgacattcagatcaaatcgtttgaa
gattttttccagttggaaacaagacctgaccaacgaaaaaatgaaggtctttaccgaaca
tttgctgagaattttccaattacggatacacgcaatcagtttgttttagaattcttagat
tatttcgtagatccaccacgttacacaattgatgagtgtatcgaaagaggattaacgtac
agtgtaccattgaaagctcgtcttaaattgtactgtactgacgaagaacacgaagatttc
gaaactgttgtacaagacgtttatttaggaacaattccttatatgtctccttcaggatca
tttattatcaatggtgcggagcgtgttattgtatctcaattacaccgttctcctggggta
tttttcggacaatctttccatgcgaatggtacaaaattgtattcatctcgtattattcct
tttaaaggatcttggattgagttcgcaacagacatcaacagcgtaatgtacgcttacatc
gatcgtaagaaaaagttaccattaactactttattacgtgctatcggatatgaaagagat
aaagatatcttagaaattttcgatttagcagaagaagtaaaagttaataaagctaattta
aagaaagttgtaggtcgtaaacttgctgcacgtgtattaaatacatggcacgaggatttc
gtggatgaagatacaggagaggttgtatctattgaacgtaatgaaattatcttagaccgt
gaaacaatcttagaaaaagatcacattgatcaaatcgtagattcaggtgtaaaaacaatt
ttattacacaaagaagatatcaattctgctgattatggaattatccataatactttacaa
aaagaccctacgaatactgaaaaagaagcagtagagtacatctatagacaattacgtaac
gctgagccaccagatgaggaaacagcaagaggaattattgataaattattcttctctgat
caacgttattcattaggtgaagtaggtcgttacagattaaataaaaaattaggcttaagc
attagcgaggatatccaagtattgactcgtgaagatatcatttcgattattaaatactta
atcgaattaatcaactctaaagcagaggtagatgatatcgatcacttatctaaccgtcgt
gtaagaacggtaggtgagcaaatggcaagccaattcggagtaggtttagctcgtatggct
agaactatccgtgaaagaatgaatgttcgtgacaacgaggtgttcacaccaatcgatttg
attaatgcaaaaacattatcatctgttatcaactcattcttcggaacgaatcagttatct
cagttcatggatcaaaccaatccattatcagagattacacacaaacgtcgtttatcagca
ttaggacctggaggtttatcaagagaaagagcgggattcgaggtacgtgacgtacaccac
actcattatggacgtttatgtccaattgaaactcctgagggaccaaacattggtttgatt
tcgtcattatgtgtattcgctaaagttaataacttaggattcatcgaaacaccgtacaga
aaggtagaagaaggaaaagtggacgtcgaatcagcacctatctacttaactgcggaagag
gaagaatctaaagtaattgctcaagccaatatcgacatggaagacgatgggactattgct
actgaacgtgtaactgctcgtgaagatggagatttcccagttgtaactccatcagaagta
gatttaatcgacgttgcacctaaccagattgcctctatctcagcatcattaattcctttc
ttggagcatgatgacgccaaccgtgcgttaatgggatcgaacatgatgcgtcaggcagtt
ccattattaaaacctcaagcaccaattgtaggtactggattagaaaaacaagttgcaaaa
gattctagaatcttagtaaatgcagaacgtgaaggtacagtaacttatgttgatgctgac
attataacaattaaatatgatcgctcagaggatgaagagttagtaagcttcgatactgca
gagaaaacatataacttaactaaattcagaaaaacgaaccaaggaactacaattacgttg
aaaccaatcgtaaaaattggtgaccgtgtagagaaagggcaagttctatctgaaggttat
gcaacagaaggaggagaattagcaattggtcgtaacatggttgttgcctttatgccttgg
caagggtacaacttcgaggatgctattgtaatctctgaaaaagctgttcgcgaagactgg
tttacatctatccacatcgatgaatattcattagatgtacgtgatacaaaattaggtatg
gaagaattaacttctgatattcctaacgtttcggaagaggcaacaaaagacttagacgaa
aacggtatgatccgtattggagcagaagtaaaacctggtgatattttgattggtaagatt
acccctaaaggagaatctgatccaacaccagaagaaaaattattacgtgcaatttttggt
gataaagcgggagatgttaaagatgcttctcttaaagcttctccatcattacgtggtgtt
gttatcgacaaaaaattgttttcacgtagcattaaggataaacgtaaacgttctcaagac
aaagcaatcattgatagtgtagaagcagagtacgacgttaaattcaatgaattaagagag
attttattagagaaattatacgttttattgaacggaaaaacttctcaaggtatttacaac
gacttgaacgaagaggtcatcaagaaaggggtaaaatatacgcaaaaaatcttatctaac
gttgaagatttcttaaacttaactggtacagaatctctttggacaacagatgaggataag
aacgaattagtaaaagagttgttacataattataaaattaagtacaacgatttacaagga
gcacttaaccgtgaaagattcacaatttctgttggtgatgagttacctgcagggatcgtt
aaattagcgaaaatctacattgcgaaaaaacgtaaactaagagtaggagataaaatggcg
ggacgtcacggtaacaaaggtattgttgcacgtattgttcgcgacgaagatatgcctttc
ttagaagacggaacgccagtaaatatcgtattgaatccacttggggtaccatctcgtatg
aatatcggtcagatttatgaaacggtattaggatgggctggacttaaaatggggcaaaaa
tttgctacacctattttcgatggtgctgaaatcgctgatatcgatagaatcacagaagaa
gcaggtattccaaaacacggtacaacatatttatatgatggtaatactggagaacgtttt
gatcaaaaagcaactgtaggagtgatttacatgttgaaattaggacacatggttgacgac
aaaatgcacgcgcgttctatcggaccatactcattaattactcaacaaccattaggaggt
aaagcacaattcggaggtcagcgtttcggagagatggaggtttgggcattagaagcattt
ggtgcatctaatatcttacgcgaaatcttaacagttaaatcggatgacgtaattgggcgt
gcgaaaacttacgaagcaatcgtaaaaggagagccaatgccagaacctggtattccagaa
tcatttaacgtattgttacatgaattacaaggtcttggattagacataaacttggaagaa
taa
DBGET
integrated database retrieval system
