Ensifer canadensis: J3R84_05405
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Entry
J3R84_05405 CDS
T09166
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ecaa
Ensifer canadensis
Pathway
ecaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J3R84_05405 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecaa03021
]
J3R84_05405 (rpoB)
03400 DNA repair and recombination proteins [BR:
ecaa03400
]
J3R84_05405 (rpoB)
Enzymes [BR:
ecaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J3R84_05405 (rpoB)
Transcription machinery [BR:
ecaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J3R84_05405 (rpoB)
DNA repair and recombination proteins [BR:
ecaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J3R84_05405 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UBI76571
LinkDB
All DBs
Position
1111394..1115533
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPIKDFSGASMLEFVSYEFEQPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVHARIDRRRKIPVSSLLMALGMDGEEILDTFYTKSLYQR
DGAGWRVPFQPDALKGQKAITEMVDADTGEVVVEAGKKLTPRLLRQLQDKGLKALKATDD
DLYGNYLAEDIVNFSTGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINVGAYIRNT
LTVDKNENRQDALFDIYRVMRPGEPPTMDSAEAMFNTLFFDAERYDLSAVGRVKMNMRLD
LEVADTVRILRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTNDVVYLSAMEEAKYHVAQANSVLDSDGAFSEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALRNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYARLVDMLRGHTAVAGPKGFKKGTELSNLVVSEYPRSQWW
MFAIEDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRR
GVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGDQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKVDELGAAQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagttttttggtaaaatt
ccagaagtcgcagaaatgccgaacctcatcgaggttcagaaggcatcctacgaccagttt
cttatggttgaagagcccaagggcggacgccctgatgagggccttcaagccgttttcaaa
tcggttttcccgatcaaggatttctccggcgcttcgatgctcgagttcgtgtcctacgaa
ttcgaacagccgaagttcgacgtcgaagaatgccgtcagcgcgatctgacctacgcagca
ccgctcaaggtgaccctgcgcctgatcgtgttcgatattgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacagaacgtctacatgggcgatatgccgctcatgaccgac
aacggtaccttcatcgtcaatggcaccgagcgcgttatcgtttcgcagatgcaccgctct
ccgggcgtgttcttcgaccatgacaagggcaagagccactcttccggcaagctgctcttc
gctgcccgcgtgatcccgtatcgcggttcctggctcgacatcgagttcgatgccaaggat
atcgtccacgcccgtatcgaccgccgccgcaagatccccgtgtcttcgcttttgatggcg
ctcggcatggacggcgaggagatcctcgacaccttctacacgaagtcgctctaccagcgc
gacggcgctggctggcgcgtgccgttccagccggatgcgctgaagggccagaaggcgatc
accgagatggtcgacgccgataccggcgaagtggttgtcgaagctggcaagaagctgacg
ccgcgcctgctgcgccagttgcaggacaagggtctcaaggccctgaaagcgaccgatgac
gacctctatggcaactaccttgccgaagacatcgtcaacttctcgaccggtgaaatctac
ctcgaagcaggcgacgagatcgacgagaagacgcttcccgtcatcctgtcggccggcttc
gacgaaatcccggttctcgacatcgaccatatcaatgtcggcgcctacatccgcaacacg
ctgaccgtagacaagaacgagaaccgtcaggatgctctgttcgatatctaccgcgtaatg
cgtccgggcgaaccgccgaccatggattctgcggaagccatgttcaacacgttgttcttc
gatgccgagcgttacgacctctcggccgtcggtcgcgtgaagatgaacatgcgtctcgac
cttgaagtggctgataccgttcgtatcctgcgcaaggaagacatcctggctgtcgtcaag
atgctggtcgagctgcgtgacggcaagggcgaaatcgacgacattgacaacctcggcaac
cgccgtgttcgttctgtcggcgaactgatggaaaaccagtaccgccttggtctgttgcgc
atggagcgcgcgatcaaggaacgcatgtcgtcgatcgaaatcgataccgtcatgccgcag
gacctgatcaacgccaagccggctgccgccgccgtccgcgaattcttcggctcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggcacttggcccgggtggtctgacccgcgagcgcgcaggcttcgaagtccgtgacgtt
cacccgacgcactacggccgtatctgcccgattgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcaacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgtaagatcgttgacggcaaggtgacgaacgacgtcgtttatctctccgcaatggaa
gaagcgaagtaccacgtcgcccaggcaaactcggttctcgatagcgatggtgcgttctcg
gaagagttcgtcgtttgccgtcatgccggcgaagttatgctggcaccgcgtgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgccgcggcgctcatcccgttc
ctggagaacgacgacgccaaccgcgcactgatgggctcgaacatgcagcgtcaggccgtg
cctctgctgcgcgccgaagctccgttcgtcggtaccggcatggaaccggtcgttgcccgc
gactccggcgctgccattgcagcccgtcgtggcggtgtcgtcgaccaggtcgatgcgacc
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtcgggcgtcgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgcccgctggtc
accgtcggtgacgttctgaacaagggcgacatcattgctgatggtccgtcgaccgatctc
ggcgatctggcactcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgttgtccgagcgcatcgtgcgtgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacaccaagctgggtccggaagaaattacc
cgcgacattccgaacgtttcggaagaagcgctgcgtaatctcgacgaagccggcatcgtc
tacatcggtgctgaggttcagccgggcgatatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgtgcgcgacacgtccatgcgcatgcccccgggcacgttcggcaccgtcgtcgaagtt
cgcgtcttcaatcgccacggcgttgagaaggacgagcgcgcgatggcgatcgagcgcgag
gaaatcgaacgactggccaaggaccgcgacgacgaacaggcgatcctcgatcgtaacgtc
tacgcacgtctcgtcgacatgctgcgcggtcacaccgcggttgcaggtccgaagggcttc
aagaagggcactgagctgtccaacctcgtcgtcagcgaatatccccgctcgcagtggtgg
atgtttgccatcgaagacgagaaggctcagggcgagatcgaagcgcttcgcgcccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgacgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgctgttaagcgc
aagatccagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgt
atcgtgccgatcgaagacatgccgttcctggaagatggtacgcacgtcgacgtcgttctg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccatcttggc
tgggcttgcgccggcatgggcaagaagatcggcgcgatgctcgatgcctacaaggcaggt
gccgatatccagccgctgcgcgacaccatcgacagcgtcatcgggtcgggcccgaagggt
gagccgatcaagcagtacgacgacgagtcgatcgtacggcttgccgagcagacccgtcgt
ggcgtttcgatcgcgacgccggtcttcgacggtgctgtcgaagctgacgtcaacgagatg
ctggagcaggcgggcctgaaggtaaccggtcagtcgacgctttatgatggccgtaccggc
gatcaattcgaccgccaggtgaccgtcggctacatctacatgctgaagctgaaccacctt
gtcgacgacaagatccacgcccgttcgatcggtccttactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggtcagcgcttcggggaaatggaagtctgggcgctc
gaagcctacggcgccgcctacaccctgcaggaaatgctgacggtgaagtcggacgacgtg
gccggtcgtacgaaggtctacgaagcgatcgtccgtggcgacgataccttcgaagcgggc
attcccgagagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctctcggtcgaa
ctcgagaacaccaaggtcgacgaactcggtgcagcgcagctgcctgacgcagccgaataa
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integrated database retrieval system
