Erigeron canadensis (horseweed): 122584616
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Entry
122584616 CDS
T07610
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta-like
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122584616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122584616
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122584616
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122584616
Transcription machinery [BR:
ecad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
122584616
DNA repair and recombination proteins [BR:
ecad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
122584616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
122584616
NCBI-ProteinID:
XP_043612605
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MSTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDTNQEIDFELFLERYQLVEPLIKERD
AVYESLTYSSELYVSARLIWKNDRRRYIQEQTILIGKIPLMTSLGAFIVNGIYRIVINQI
LQSPGIYYQSELNDNGISVYTGTIISDWGGRLELEIDRKARIWVRVSRQQKLSILVLLSA
MGLNIREILENVCYPELFLSFLNXKKKIGSKENAILEFYQQFACVEGDPVFSESLSKDLQ
KKFFQQRCELGGIGRRNMNRRLNLDIPQNNTFLLPRDILAAADRLIRIKFGMGTLDDMNH
LQNKRIRSVADLLQEQFGLALVRLENMARGNIYAALKHNWTPTPQNLVNSTPLTDTYKVF
FRLHPLSQVLDRTNPLTQIVHGRKLSYXGPGGLTARTATFPIRDIHPSHYGRICPIDTSE
GINVGLIGSLAIHARIGRWGSLESPFYKIYEKSKGARMLYLSPGTDEYYMVAAGNSLALN
RGIQEEQVVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNM
QRQAVPLSQSEKCIVGTGLEGQAALDSGALAIAEREGKIIYTDTDKILLSGNGDTLRIPL
VMYERSNKNTCMHQKTQVRRGKCIKKGQILACGAATVGGELALGKNVLVAYMPWEGYNFE
DAVLISERLVYEDIYTSFHIRKYEIQINQGLERVTNEIPHLEVHLLRNLDKNGIVMLGSW
VETGDILVGKLTPQMVKESSYAPEDRLLRTILGMRVYTSKETCLKLPIGGRGRVIDVRWV
QSSKTDETEKTESIRVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDM
VFNPLGVPSRMNVGQIFESSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQ
TANPWVFEPESPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGRYSRLT
QQPLKGRAKKGGQRVGEMEVWALEGFGVAYILQEMLTYKSDHIRARQEVLGTIIFGGRIP
TPEDAPESFRLFVRELRSLALELNHFLVSEKTFQLNRKEA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaatacctggatttaatcagatacaattcgaaggattttgtaggttcattgat
cagggtttgacagaagaactttctaagtttccaaaaattgaagatacaaatcaagaaatt
gactttgaattatttttggaaagatatcaattggtagaacccctgataaaggaaagagac
gctgtgtatgaatcactcacatattcttctgaattatatgtatccgcgagactcatttgg
aaaaacgataggcgtaggtatatccaagaacaaacaattttgataggaaagatccctcta
atgacttctctgggagcttttatagtaaatggaatatatagaattgtgatcaatcaaata
ttgcaaagtcccggtatttattaccagtcagaattgaacgataacggaatttcggtttat
accggcaccataatatccgattggggaggaagattagaattagagattgatagaaaagca
aggatatgggttcgtgtgagtaggcaacaaaaactatctattctagttctattatcagct
atggggttgaatataagagaaattctagagaatgtttgctatcctgaattatttttgtct
tttctgaatngaaaaaaaaaaatagggtcaaaagaaaatgctattttggagttttatcaa
caatttgcttgtgtagagggagatccggtattttctgaatccttatctaaggatttacaa
aaaaaattctttcaacaaagatgtgaattgggagggattggtcgacgaaatatgaatcgg
agactgaaccttgatataccccagaacaatacatttttgttaccgcgagatatattggca
gccgcggatcgtttgatccgaataaaatttggaatgggtacacttgacgatatgaatcat
ttgcaaaataaacgtattcgttctgtagcagatcttttacaagagcaatttggattagcc
ttggttcgtttagaaaatatggctcgaggaaatatatatgcagcacttaaacataactgg
acaccaactccccagaacttggtaaattcaactccattaacagatacttataaagttttt
ttccgtttacacccattatctcaagttttggatcgaacgaatccattgacacaaatagtt
catgggagaaaattgagttatnttgggcccgggggattgactgcgcgaactgctactttt
ccaatacgagatattcaccctagtcactatgggcgcatttgcccaattgacacatctgag
ggaataaatgttggacttattggatccttagcaattcatgcgaggattggtcgttgggga
tctctagaaagtccgttttataaaatttacgagaaatcaaaaggggcgcggatgctttat
ttatcaccaggtacagatgaatactatatggtagcggcaggaaactctttggccttgaat
cggggtattcaggaagaacaagttgttccagctcgatatcgtcaagaattcctgactatt
gcatgggaacaggttcatcttcgaagtattttttccttccaatatttttctattggggct
tccctcattccttttatcgagcataatgatgcgaatcgggctttaatgagttctaacatg
caacgtcaagcagtccctctttctcagtccgaaaagtgcattgttggaactggattggaa
ggccaggcggctctagattcaggggctcttgctatagccgaacgcgagggaaagattatt
tataccgatactgacaagatccttttatcaggtaatggggatactctaaggattccatta
gttatgtatgaacgttccaacaaaaatacttgtatgcatcaaaaaacccaggttcggcgg
ggtaaatgcattaaaaagggacaaattttagcgtgcggtgctgctacagttggtggcgaa
ctcgctttgggtaaaaacgtattagtagcttatatgccatgggaaggttacaattttgaa
gatgcagtactcattagcgagcgcttagtatatgaagatatttatacttcttttcacata
cgtaaatatgaaattcagattaaccaaggcctcgaaagggtcactaacgaaataccgcat
ttagaagtccatttactccgaaatttagacaaaaatggaattgtaatgctgggatcttgg
gtggaaacgggtgatattttagtaggtaaattaacgccgcaaatggtgaaagaatcatcg
tatgctccggaagatagattgttacgaaccatacttggcatgagggtatatacttcaaaa
gaaacttgtctaaaactacctataggcggtaggggtcgggttattgatgtgagatgggtc
cagagttctaagacagatgagacagagaaaacagaaagtattcgtgtatatattttacag
aaacgtgaaatcaaagtaggcgataaagtagctggaagacatggaaataagggtatcgtt
tcaaaaattttgcctagacaagatatgccttatttgcaagatggaagacctgttgacatg
gtcttcaacccattaggagtaccttcacgaatgaatgtaggacaaatatttgaatcttca
ctcgggttagcgggggatttgctagacagacattatcgaatagctccttttgatgagaga
tatgaacaagaagcttctagaaaactggtgttttctgaattatatgaagccagtaagcaa
acagctaatccatgggtatttgaacctgagtctccaggaaaaagcagaatatttgatgga
agaacgggggatccttttgaacaacctgttataataggaaagccttatatcttgaaatta
attcatcaagttgatgataaaatacacgggcgttccagtgggcgttattcacgtcttacg
caacaaccccttaaagggagggccaagaaagggggacaacgggtaggagaaatggaggtt
tgggctttagaggggtttggcgttgcttatattttacaagagatgcttacttataaatct
gatcatattagagctcgccaagaagtacttggtactataatctttggaggaagaataccg
actcctgaggatgctccagaatcttttcggttgttcgttcgagaactacgatctttagct
ctggaactgaaccattttcttgtctctgagaagactttccagcttaataggaaggaagct
taa
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integrated database retrieval system
