Erigeron canadensis (horseweed): 122587479
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Entry
122587479 CDS
T07610
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03420
Nucleotide excision repair
ecad04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122587479
09124 Replication and repair
03420 Nucleotide excision repair
122587479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122587479
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122587479
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
122587479
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
122587479
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
122587479
NCBI-ProteinID:
XP_043615601
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All DBs
Position
2:38249767..38253455
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AA seq
447 aa
AA seq
DB search
MWKQIRERETGKTSTKSFINRIRSFRSSSLLLSNHKDFLSPHRGSINSLQVDLTEGRYLI
SGASDASLAVYDIQRATDYEGGGLIAKHKPILLVDKQHQNGHKYAISTAIWYPVDTGLFV
TGSYDHHINVWDTNTTQVVMDFKMPGKVYRTAMSSLATSHMLIAAATEDVQVRLCDMASG
AFAHTLSGHRDGVMAVEWSTSSEWVLMTGGCDGAVRLWDIRRAGCFSVLDQSNSQLGRRP
PLLDKSTIKVSTSKSSTRAPHKKVASGSGSKHSGSSKVLKHAKGSTKQRLHPGLLSGQDR
ATAHYGAVIGLKATEDGMYLLSAGSDSRLRLWDIESGSNTLVHYEIVRLQSSKPVQLAVT
QDSSTVFLPCMTSIKAFDVWSGKTNMTLQGHYEHVNCCWYSTHDQELYTGGNDRQILVWS
PPKLISEEECDRRTGQPLVADKDNWSD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagcagatcagagaaagagaaacaggaaaaacatccacaaaatccttcattaat
cgtatccgttcttttcgttcttcttctctccttctttccaatcataaagatttcctctct
cctcaccgcggctccattaattcccttcaggttgatttgacagaggggaggtatttgata
tctggagcatcagatgcatcacttgctgtttacgatattcaacgagcaacagactacgag
ggaggtggtctgattgctaagcataagcctatactacttgtggataagcaacaccaaaac
gggcataaatatgccatatccacagccatatggtatccggttgatacaggtctttttgtc
acaggttcatatgatcatcacatcaacgtttgggataccaataccacacaggtggtgatg
gattttaaaatgcctggaaaggtttataggacagccatgtcctcgttagccacatcacac
atgcttattgctgctgcaaccgaggatgttcaggttcgtctttgtgatatggcttcaggt
gcatttgctcacacattatcgggtcatcgtgatggtgtaatggcagtggagtggtctact
tctagcgagtgggttctgatgactgggggttgtgacggagcagtacgtctttgggacatt
agacgtgcaggatgcttttccgttttagatcaatctaactctcagcttggaagacgccca
cctctacttgacaaatccactattaaggtttcaacatctaagtcctctacaagagcacca
cataaaaaggtggcttctgggagtggctcaaagcactctggtagtagtaaagttcttaaa
catgctaagggatctactaaacagagactccatcctgggctgttgtctggtcaggatcgt
gctacagctcattatggtgcagttataggactgaaagcgaccgaagacggcatgtatctt
ttaagtgcaggatctgattcaagattaaggttgtgggacatagagtctgggagcaatacg
cttgtgcactatgagatagtgcgactgcaaagtagcaagccggtgcagttggccgtgact
caggattcatccaccgtctttcttccatgcatgacatctataaaagcatttgatgtgtgg
tcagggaaaactaacatgactcttcaaggacactatgagcatgtaaattgctgttggtat
agcactcatgatcaggaactatacactggtggtaatgacagacaaatccttgtctggtct
cctcccaaattgatttctgaagaggaatgtgatagaagaacagggcagcctctcgtagcc
gacaaggataactggagtgactga
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