Erigeron canadensis (horseweed): 122592734
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Entry
122592734 CDS
T07610
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122592734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122592734
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122592734
Complex C
U4/U6.U5 tri-SnRNP related factors
122592734
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Gene cluster
GFIT
Motif
Pfam:
PRP38
HIND
Motif
Other DBs
NCBI-GeneID:
122592734
NCBI-ProteinID:
XP_043620963
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Position
3:25771379..25776987
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AA seq
369 aa
AA seq
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MANRTDPSAKNIHGTNPQNLVEKILRSKIYQNTFWKEQCFGLTAETLVDKAMELDHVGGT
HGGNRKPTPFICLVMKMLQIQPDKEIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDVYRYL
EPLYNDYRKIRRKNGDGQFTLTHVDEVIDELLTKDYSCDIALPRIKKRLTIEAIGTLEPR
KSALEDDFEEEEEKDEDEQLMETDGGHEKDYYREQSPARERGRDRKRDSHRHRDRDIDRE
YERDYDRDRGRGRDRDRERDRDRYRDRDYGRDRERDRRDRDRGGRRRSYSRSRSRSRERD
RKDRDYDEERRRRRARDSSASPRRGAEDEKPPKKKKEKEKKDDGFDHPDPEIAAANRLRA
SIGLGPLRT
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgtacggatccatcagcgaaaaacatacatggaacgaatccacaaaactta
gttgagaagatattgagatcaaaaatctatcaaaacacattctggaaagaacagtgtttc
ggtttaacagccgaaacgcttgtcgataaggccatggagctcgatcacgtcggcggcacg
cacggcggcaaccggaaacctactccgttcatttgccttgttatgaagatgctccagatc
caacctgataaagaaattgttgttgaattcatcaaaaacgaagactataagtatgtacga
gtgcttggagcgttttatttgcgacttacagggacggatattgatgtgtatcggtattta
gagcctttgtacaatgattaccggaagataaggcggaaaaatggtgatggacaatttaca
ttgacacatgtggatgaggttattgatgaactcttgacgaaagattactcgtgtgacatt
gctctgccacgtataaagaaaaggcttaccattgaagcaattggtactttggaacctagg
aaaagcgcacttgaagatgattttgaggaggaagaggaaaaagatgaggatgagcaactg
atggaaactgatggtggtcacgaaaaggattactatcgtgagcaaagcccagcaagggaa
agaggccgagataggaaacgtgatagccatagacatagggaccgagatattgatagggag
tatgagagagattatgacagggaccgtggaagagggcgtgatagggatagagaaagggac
agggatcgttatcgcgatagagattatgggagggacagagaacgtgataggcgtgacagg
gatcgtggtggcaggaggaggagctactcaaggagcagaagcaggagtagagaaagggac
aggaaggatagagattatgatgaagagagacgcaggagacgtgcacgggatagcagtgct
agtcctagaagaggggcagaggatgaaaaaccgccaaagaagaagaaggaaaaggaaaag
aaggacgacggatttgaccatcccgatccagaaattgctgcagccaacaggttacgtgca
tcaattggtcttggacctctgaggacatga
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