Erigeron canadensis (horseweed): 122593856
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Entry
122593856 CDS
T07610
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122593856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122593856
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122593856
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122593856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
122593856
NCBI-ProteinID:
XP_043622240
LinkDB
All DBs
Position
3:40731089..40747915
Genome browser
AA seq
2393 aa
AA seq
DB search
MIPLSQRLSTDIRLLFDSLNDSNSDSVLRELSQYADYGMEGSVLLLETCLDHFNVYERDL
KSNRLEPVVASLFRKLFEKPQFSTVFTVSVRPTSITEEFLDNLSVALQLSAYEKLGFGLA
LTDSDNNDIRMAGKNFCMRQIEELCATNASLHNSDYVQDVLLFLNKSDVLSKHVDLFMQL
ISLVQFNKDSRFILAPLVSDELQDSDLLRNMDYLNEGNDNEFDAILAEMEREMNMADMLK
EMGYNCTSDVSLCKDMLSSFSPLTEVTIARILGTIVRSDTSLQDHENAFSTFCSALGRGG
LTDIPLLNSWNTDVLIESFRQLAPGISWTAVIESLDHDGFYIPDEAAFSLLISCYKHATQ
DPFPLAAVCGNVWRNTEGQLSFLKYAVAVPPEVFTFAHCKRQLANVDAVYSHKFQSGHAN
HAWLCLDLLEVLCQLAERGLAKSVRSLLEYPLNNCPEVLLYGMAHVNTPYNLLQHEVALA
AHHVVLKDPSVGGILWHVNPPFLLRALIDALTLDADNMSRVFDLCQELKIISPVLDMIPM
SLGIRLAALASRKELIDLEKWLSSNLSTYRENFFEECLRFLRLAQESSNRLHNSGNIWSL
YMEAAPVFYKVLHSQSGLLTSNQLSKDLASLHLKTTNNNLMMKNNGGLDSSTSEVYADDI
ETEANSYFQQMFSEQLTVDAMIQMLVRFKESHEKREQSIFECMIANLFEEYKFFNRYPER
QLKLAAVLFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFAFGTTALEKFVERLNEW
PQYCQHILQISHLRGAHPDLVAFIERALSRGSSGHPESDATQNPAADQHHHSISQANSEV
PGSFFPSIGPGGPPISSQISSPIQLQQRSQSYLDERHRASATSSSYIKPNLANTGPASVA
PANDAASIPKPQSVVSSSSALASSPAFVRPSRAVPSARFGSALSIETLVAAAERRETPIE
APPSETQDKISFIINNLSAANIEAKAKEFTEVLKEQYYPWFAQYMVMKRASIEPNFHDLY
LKFLEKANSKILTREIEKATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKITIGRNYV
LRANQIDPKALVIEAYEKGLMIAVIPFTSKILEACDNSLAYQPPNPWTMGILGLLAEIYA
MPNLKMNLKFEIEVLFKNLSVDLKEVTPSALLTDRVREVEGNPDFSNKDVGPVQQPVVGE
VKSNMIPNLNQVELPVEVTNSSHPGGHSRILPQYAAPHHLPAATLSEDEKMAAFGIPDNL
LSAQGLLQAQMPLSVGQIPSSMDQQVIINPKLQALALHMPFQSVLGISMEVAIKEIVSSI
VQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKEPLRGSISSQ
LRNNLQGLNLNIASDLLEHAVQLVTNDNLDLGCAFIEQAATEKAVQTIDSELAPQLSIRR
KHREGVGPAFFDASLYTQGHVAVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSNQNSN
AVPLGPSPPPGSGALHRGYSPASGLQSPGIFSPSLGNPGINAVTHSLDAEDMEPSSAKLP
GGSHNFENEAVLSSFSSVSAPELHIPEVSSVSKEAGVYGQPLPSPSASDRAMSATAEPSL
TTKDAVDKFQSILEKLEFMIANDAKEAEFQSVIGEVPGVILRCISRDEAASAVAQKVFKG
LYENAANTAHVSAYIAMLAAIRDVSKLVGKELTTWVIYSDEDRKFNRDITVGLIRRELLN
LAEYNVHMAKLLDAGKNKVATEFAISLIQTLVASDSRVISELHNLVDALAKLATRPDAPE
ALQQLVEVVRNPAASSGIPSGKDDLIRQSKDKKVANLSVASRDDTNVSETSESDLAGFNE
DVSHLFAEWYRIYELPGVNDQASARFVLQLQQTGLLKADDTSDRFFRRLLDVAVSHCITS
EGAVQSHQQTQTLSFLAIDMYASLVYSILKFSPVDHGLSKLSLLSKVLAVTVRFIQKDAE
DKKTSFNPRPYFRLFIDWLLDLNTLDPVFEGANFQVLTALATSFHALQPLKVPAFSFVWL
ELVSHRSFMPKLLSVNAQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVRFLYKGTLRVLL
VLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFPRNMRLPDPSTPNLKIDLLVEISQ
SPRILSEVDAALKAKQMKSDVDEYLKARPQGTSFLSELKQKLLLSPTEAARAGTRYNVPL
MNSLVLYVGMQAIQQLQARTPHGQPMASNASLHIFHVGAALDIFQTLILELETEGRYLFL
NAVANQLRYPNNHTHYFSFILLFLFSESNQEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPRYTFWSRSFTRCAPEIEKLFESVSRSCGGAKPVDDNVVAGGISDTMH
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttatctcagagattgtcaactgacattcggttattgttcgatagcttgaac
gattccaactccgactccgttcttcgtgaactctctcagtatgctgattatggaatggaa
ggaagtgttctgcttttagagacctgcttggatcactttaatgtttatgaaagggacttg
aaaagtaatcgcttggaacctgtagttgcttctctttttaggaagttgtttgaaaagccg
cagtttagtactgtatttactgtgtcagttaggccaacttcaatcactgaagagtttttg
gataatctgtcggttgcgcttcaattatcagcgtatgagaaacttggatttggtcttgct
ttgacagattcagacaataatgacatcagaatggctggtaaaaacttttgtatgagacag
attgaggaattgtgtgccaccaatgcctctttgcataattctgactatgttcaggatgta
ttgctgtttctcaataaatctgacgttctttctaaacatgtggatctgtttatgcaatta
atatctctggttcagtttaataaagattcgaggtttatcttagctcctcttgtttcagat
gaactgcaagactctgatttattgaggaatatggattatctcaatgaaggcaatgacaat
gaatttgatgctatcctagcagaaatggagagggagatgaacatggctgatatgctgaaa
gaaatgggctataactgtacatcagatgtatcactttgcaaggatatgttatcctcgttc
tcacctctaactgaagtcaccattgccaggatacttggcacaattgttcgatctgatacc
agtctccaggaccatgaaaatgcattttcaacattttgttctgctcttggtagagggggt
ttaactgatattcccttgttgaactcttggaacacggatgtccttatagaatcatttagg
cagcttgctcctggaattagctggactgctgtgattgagagtcttgatcacgatggtttc
tacatcccggacgaggcagcattttcactactgatttcatgctacaaacatgcaacccag
gatccctttcctttggctgctgtttgtggcaatgtttggagaaacaccgagggacaactt
tcttttctgaagtatgccgttgctgtgccgcctgaagtgttcacgtttgctcattgcaaa
agacaattggcaaatgttgatgcagtctatagtcacaagtttcaatctggtcatgcaaat
catgcgtggttatgtcttgaccttttggaggtcttgtgccagcttgctgagagaggcctt
gcaaagtctgttcgatcgctgcttgaatatccccttaacaattgtcctgaagtgttgttg
tacgggatggcccatgttaatacaccgtataatcttcttcagcatgaagttgctttggct
gctcatcatgttgtactcaaagacccttctgtgggtggcatcctttggcatgttaaccct
ccctttttgttgagagccttaattgatgcactcaccttggatgcagataacatgagcaga
gtctttgatttatgccaggagttaaagattatatctcctgtattggatatgatacccatg
tcattgggtattaggctggctgctttggcttctcgaaaagaactcatagatcttgagaag
tggctgagctcaaatttaagtacttacagagagaacttttttgaggagtgcctgcgattt
ctgaggcttgctcaggaatcttccaatcgtttgcataactctggtaacatctggagcctt
tatatggaggcagctcctgtgttttataaggtccttcattcacaatcaggcttgctcacc
tctaaccaactatccaaggatttggcaagtttacatttgaagaccacgaacaacaattta
atgatgaagaacaatggtggtcttgattcgtctacatccgaagtatatgcggatgatata
gagacggaggccaactcttatttccagcaaatgttttcagagcagttgacggttgatgca
atgattcaaatgctggtccgattcaaggaatctcatgaaaaaagggaacaatcgatattt
gagtgcatgattgcgaatctatttgaagagtacaagtttttcaacagataccctgagaga
caactcaaactcgctgcggttctctttggattgcttatcaagaatcaacttgtgacccat
ctgacacttggtattgcactacgagctgttttggatgcattacgtaaacctgcagattct
aaaatgtttgcttttggtacaacggctctggagaagtttgtggaacgcctgaatgaatgg
ccacaatactgtcaacatatcttacaaatatcacatctacgtggtgctcatcctgatctt
gttgcattcattgaaagggcactcagcagaggttcgtcaggccacccagaatcagatgca
acccagaatcccgcggctgatcaacaccatcattctatctcacaagcgaattctgaggtg
ccgggttcatttttcccttcgattggacctggtggtccaccgattagttctcagatatct
tctccaattcagcttcaacagagaagccagagttatctagatgaaagacacagagcctct
gcaacttcgtccagttatataaaaccaaacttggctaacactggtccagcctcagttgct
ccagcaaatgatgctgctagcatcccgaagccacagagtgtagttagctcctcctcggca
ctggcttcgtctcctgcttttgttcgtccatctcgagcagttccttcggcaaggtttggc
tctgctttaagtatcgaaacacttgttgctgccgctgaacgcagagaaacacccatagag
gcccccccatcagaaacccaggataagatttcattcattatcaacaatttatcagctgcc
aacattgaagctaaagcaaaggaattcacggaagttttgaaagaacagtactatccctgg
tttgcgcagtacatggttatgaaaagagcgagtattgaaccaaattttcacgacttgtac
ctgaagtttcttgagaaagccaactcaaaaattttaacaagagagattgaaaaagccacc
tatgagaattgcaaggttctcctaggatctgaacttataaagtccagctcagaagaacgt
tcgttgctgaagaatcttggaggttggctgggaaagatcacaattggtaggaactatgtt
cttcgcgctaaccagattgatccaaaggctctagtaattgaggcatatgaaaagggtttg
atgattgcagtgattccatttacttccaagattttagaggcatgcgacaacagtcttgca
tatcaacctcctaatccctggaccatgggaattcttggattacttgctgaaatctatgca
atgccgaatctcaaaatgaatctcaagtttgaaattgaggtcttgtttaagaatcttagt
gtggatttgaaggaagtaaccccatcggcccttctcacggacagagtgagagaagttgaa
ggaaaccctgatttttctaacaaagatgtcgggccagttcagcaaccagtggttggggaa
gtcaagtctaacatgatacctaatctaaatcaggttgagttacctgttgaagtcactaat
tcttctcatccaggtggtcattcgcgtatattgcctcagtatgctgctcctcatcatctt
cctgctgctactttaagtgaggatgagaagatggctgccttcggcatacctgataacctt
ttatctgctcaaggacttctacaagcacaaatgccgctttcagttggtcagataccatca
agtatggaccaacaagttattattaatccgaagcttcaagccctggccctgcatatgccc
ttccagagtgtacttggaatttccatggaggtagctatcaaggaaatagtttctagcatt
gtgcagcgtagcgtatctatagcaactcagacaacaaaggaacttgtcttaaaggactat
gctatggagtcagacgaaagtcgtatacacagtgcggctcacttgatggttgcaagtttg
gctggtagtctagctcatgtgacgtgcaaggagcctcttcgtggttcaatatcaagtcag
ctaagaaataatcttcaaggtttgaatctgaatattgccagcgatttgcttgaacatgca
gttcagcttgtaaccaacgacaaccttgatttgggttgtgcttttattgaacaggctgca
actgaaaaggctgttcaaacaatagatagcgaacttgcacctcagctttcaataagaagg
aagcacagagaaggggttggccctgccttttttgatgcgagcctctatacacaaggtcat
gttgctgttttaccagaagcccttcgccctaaacctggccgcttatcccattctcaacag
cgggtttacgaggattttgttcgcttaccctggcaaaatcaatccaaccaaaactcgaat
gctgtacctcttggtccctctcctccaccaggaagtggggctctacaccgtggatatagt
ccagcttctgggctacaaagccctggtattttttcacccagcctgggaaaccctggtatc
aatgctgtaacacattccttggatgctgaagatatggagcccagttcagcaaaactacct
ggtggctcacacaactttgagaacgaagctgttctttcttcattttcttcagtgtcggct
cctgaattgcatataccagaagtctccagtgtttccaaagaagcgggtgtgtatgggcag
cctttgccctcaccttcagcttctgatcgtgctatgagtgccactgccgaaccttcatta
accaccaaagatgcagtggataaattccagtccatcttagagaagctggaatttatgata
gccaatgatgccaaggaagctgaatttcagtctgttattggtgaggttcctggggtcatt
cttagatgcattagccgagatgaggctgcatcagctgtggctcagaaggtcttcaaaggt
ctgtatgagaatgcagcaaacaccgctcatgtcagtgcttatattgcaatgctagctgca
attcgtgatgttagcaagcttgtgggtaaagagttgactacatgggtaatatattctgat
gaagataggaagttcaacagagatatcaccgttggcttaatccgcagggagctgctgaat
cttgccgagtataatgttcatatggcaaagcttcttgatgcgggaaagaacaaagtggca
acagaatttgcaatttccctcatccaaacattggtggctagtgattcaagagtaatttct
gaactccataatcttgtggatgcattggcaaagcttgcgacaaggcctgatgctcccgag
gcccttcaacagcttgttgaagttgttaggaatccggcagcatcctctggcattccttct
gggaaggatgatcttatcagacaatcaaaagataagaaggtggctaacctttctgtagca
agcagggatgacaccaatgtttcagaaacttctgaatcagacctggctggtttcaatgag
gatgtttctcatctatttgctgaatggtaccggatatatgaacttcctggtgtgaacgat
caggcgtctgctcgttttgttttacaattgcagcaaactgggttgttgaaagctgatgat
acatcagatcgctttttccggcgtctgctggatgtggctgtttcacactgtataacttct
gaaggtgccgtccaatctcatcaacaaactcaaacattatccttcctggccattgatatg
tatgcgtcacttgtgtattcaatcctgaagttctcccctgttgatcatggattaagcaag
ttgtcacttctgtcgaaggtgttagcggtgactgtgcgattcattcaaaaggatgcagag
gataagaagacatcttttaatcccaggccatattttaggctgttcattgattggcttctt
gaccttaatactcttgatccagttttcgaaggtgcaaactttcaggttttgacagctcta
gcaacttcttttcatgccctgcagcctttgaaggttcccgctttcagctttgtttggcta
gagctagtaagtcacagaagtttcatgccgaaacttttaagtgtaaatgctcagaaggga
tggccgtacttccaacgcttgttagttgacttgttccagttcatggagcctttcttgagg
aatgccgaacttggcgagccggttcgatttctatacaaaggcacactcagagtgcttttg
gtgttgcttcatgatttccccgagttcctttgtgattatcatttcagtttctgtgatatc
attcctccaagttgtatccagatgcgaaatatcgtcctcagtgcatttccacgtaacatg
aggctgcctgatccttccactcccaacttgaagattgatctgcttgtggagattagtcaa
tcaccacgcattctctcggaggttgatgcagcactgaaagccaagcaaatgaaaagtgat
gtggatgagtatttgaaggctaggccacaaggcacttcatttctttctgaattgaagcag
aagctgcttctttcaccaactgaggctgcaagagcggggacacgatacaatgtgccatta
atgaactccctcgtactttacgttggaatgcaggccatccaacagctgcaggcaagaact
cctcatggacaaccaatggctagtaatgcttcactgcatatctttcatgtgggtgctgcc
ttggacatctttcaaactctaatattagagttagagacagaaggacgttacctattttta
aatgcggttgcaaatcagttgcgttatcccaacaaccatacacattacttctcattcatt
ctcctcttcttgttttccgagtcaaaccaggaggctattcaggaacagatcacgagagtt
ctgttggagcggttgattgttaatcggcctcacccttggggccttttaatcactttcatt
gagctaattaagaaccccaggtacaccttctggagccgatctttcacaaggtgtgctccc
gagattgagaagttgtttgaatcagtttcaagatcgtgtggtggggctaaaccagtggat
gacaatgtggttgctggagggatttctgatactatgcattag
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integrated database retrieval system
