Erigeron canadensis (horseweed): 122597491
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Entry
122597491 CDS
T07610
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122597491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122597491
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122597491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
TraD_N
Motif
Other DBs
NCBI-GeneID:
122597491
NCBI-ProteinID:
XP_043626015
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Position
4:35652839..35660162
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AA seq
997 aa
AA seq
DB search
MKVGRTTEMHSGKVSRCSAVKRKLILESSEESATRSPKYTAYSSDKNNRKKFDYTDPVAL
RNMVIDLDYPKYGSVTKDIEDLFARRKIPILNKLSSPSVNSAELKSGKDSSNVIDDTKHE
NVMSHLIINIDSDDDDDVKPAVQTPSPPFQDVVLNQPSKNLSMVQYLVGSPVLKIWSNSS
YHSMYTSLYTFQCQMLMQITEDARKNIFDLKSISPAEVTGAQNRAEIDGQVSLQKLQKGV
SAPGQISMEGEDVTAVEHNVEKDNDEKNENDKRVKDDDVEVKSDKEDGVVDSRNDKIIVD
DKESKNNHNKGMYVGVEDDDTDMQENDPRSDFNFDGLADIWKEMAIGLESSRDIDPLSTE
HASEDEKDCDHSFILKEDIGSVCRVCGIIQRSIESIIEYQRPKGSNSIRTRYYEVGQKKS
GASVAPIADVVKLPGTDFAVCGLSAHPRHISQMKPHQVEGFNFLLRNLVSENPGGCILAH
APGSGKTFMLISFIQSFMAKYPDAKPMVILPRGILGTWKKEFERWKVEELRLFDLYSVKA
DGSRGQQLEVLKRWTNQRSILFLGYQQFASIVCDIDTRAETVSCQNILLTYPSILILDEG
HTPRNEDTNILTALEKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETPKLIKRR
ILSRVPYESKKNLIKNSTNNEFYEVVEHALFKDDNFKRKVTVIKDLREMTSKVLHYYKGD
FLDELPGLMDFSIFLNLTSKQKREIPGLKKLPIFKRNSNGSAIYVHPGLKSLLKTTDTKK
DTSGDIDSKIDHLLEKVDEMEGVKAKFFLNMLRLCVSGGEKLLVFSQYRLPLKFLVRLTM
KTRKWSLGKEIFMITGDDNNDDREASMDKFNNSPDSRVFFGSIKACGEGISLVGASRVII
LDVHLNPSITRQALGRAFRPGQVRKVYTYRLVAATSPEEEDHATCFRKESVAKMWFEWNE
YCGHHDFEMETVSVKDCGDEFLETPCLNEDIAVIYKR
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgggccgtacgacggaaatgcattccggtaaagtttctagatgttccgcagtt
aaacgtaaactgattcttgaaagtagtgaagaaagtgcaacccggagccctaaatatact
gcatactcatccgataaaaacaaccgcaagaaatttgattatacagatccagttgctctt
agaaacatggtaattgatcttgattatcccaagtatggctctgtcacaaaagacatagaa
gatctttttgcaagaaggaagattccgattttaaataaattgtcttcacctagcgttaat
tcagcagagcttaaatctgggaaggactcttccaacgtgattgacgatacaaagcatgaa
aacgttatgtcacacctgataattaacattgactcggatgatgatgatgatgttaaacca
gcagttcagactccttccccaccattccaggatgtagtattgaatcaacctagcaagaac
ctttcaatggtgcagtatttggttggttcacctgtcttaaagatttggtctaattcatca
tatcattcgatgtacacatctctatatacttttcaatgccaaatgttaatgcagataacc
gaggacgcaaggaagaatatatttgacctgaaatcaatttccccggcagaagttactggg
gcccagaacagagctgagattgatggtcaagtttccttgcaaaagcttcagaagggagtt
tctgctccaggccaaatttcaatggaaggggaagatgtaactgctgtagagcacaatgtt
gagaaagacaatgatgagaagaatgaaaatgacaagagggtaaaagatgatgacgtggaa
gttaaaagtgacaaagaagatggtgttgtggatagtcgaaatgacaaaatcatagtagat
gacaaggagagtaaaaacaatcataataagggcatgtatgtcggtgttgaggatgatgat
actgacatgcaagaaaatgatccaagatccgatttcaactttgatggcctggctgatata
tggaaagaaatggctattggattagaatcttcaagggatatagaccctttatctacggaa
catgcaagtgaagatgaaaaagattgtgatcattcttttattttgaaagaagatattggt
tccgtttgccgtgtttgtggaataattcaaaggagtatagaatccataattgaataccag
cgtcccaagggctcaaatagtataagaactcgttattatgaagttggccaaaagaaatca
ggagcttctgtggctcctattgctgatgtggtgaagttacctggaactgatttcgctgtt
tgtggcctatctgctcatccgaggcacataagtcaaatgaaaccacatcaagttgagggc
tttaattttcttcttagaaacttggtgtccgaaaaccctggtggttgcatccttgcgcat
gctcctggatctggaaagacatttatgctcattagtttcattcaaagtttcatggccaag
tatccagatgctaaaccaatggtgattctccctaggggtattttaggaacatggaaaaaa
gagtttgagaggtggaaagttgaggaacttcggttgtttgatttgtattcggtgaaagct
gatggtagcagaggtcaacagcttgaagtgctaaaacgatggactaatcagagaagcata
ctatttcttgggtaccagcagtttgcctctattgtgtgtgacatagacacaagagctgaa
acagtcagttgccagaatatactattgacatacccttcaattctcatattagatgaaggt
catactccgagaaatgaagacactaatattctaactgctcttgagaaagtccagacccct
agaaaggtggttctttccggaaccctttatcaaaatcatgttagagaagttttcaatatt
ctgaacctcgtccgcccaaagttcctgaagatggagactcccaagttgattaaaaggcgt
attttgagcagagtaccatatgaaagcaagaaaaacctcatcaagaatagcacaaacaat
gagttttatgaggtggtggagcatgccttgttcaaagatgataactttaagagaaaagtg
actgtcatcaaagatcttcgtgagatgactagtaaagttcttcactattacaaaggagat
ttcttggatgaactacctggacttatggacttctcgatctttctcaacctcacctcgaaa
caaaaacgtgagattccaggattgaaaaagctaccaattttcaaaaggaattccaatggg
agtgctatttatgttcatccgggtcttaagtcacttttgaagactacggatacaaaaaaa
gacacaagcggtgacattgatagcaagattgatcacctgctagagaaagtggatgagatg
gaaggagtgaaagccaagtttttcctcaacatgctccgcctttgtgtatctggaggggag
aagctcttagtgttcagtcaatatcgattgcccctaaagtttttggttcggctgaccatg
aagactagaaagtggagtctagggaaagaaatctttatgataacgggagatgataacaat
gatgatcgcgaggcatcaatggacaaattcaacaactcacctgactctcgagtctttttt
ggatcaattaaagcatgcggggaaggaatctctcttgttggggcctcacgagtcatcatt
ttagatgttcatttgaacccctctattactcgccaagcactaggacgtgcctttagacca
ggacaagtcaggaaggtatacacctaccggttagttgctgcaacttcacctgaagaggaa
gaccacgccacctgcttcagaaaagagtctgttgccaaaatgtggttcgaatggaacgag
tattgtggtcatcacgactttgagatggagacagtcagtgtcaaagattgtggtgatgag
tttctggaaacgccatgtttgaatgaagacattgccgtcatctataaaagatga
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