Erigeron canadensis (horseweed): 122598472
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Entry
122598472 CDS
T07610
Name
(RefSeq) crooked neck-like protein 1
KO
K12869
crooked neck
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122598472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122598472
03036 Chromosome and associated proteins [BR:
ecad03036
]
122598472
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122598472
Complex C
122598472
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
122598472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_14
HAT
Suf
TPR_19
TPR_16
TPR_2
TPR_CcmH_CycH
TPR_8
TPR_17
HAT_Syf1_M
BTB_2
Motif
Other DBs
NCBI-GeneID:
122598472
NCBI-ProteinID:
XP_043627001
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All DBs
Position
1:49070195..49078609
Genome browser
AA seq
705 aa
AA seq
DB search
MANREGDPNLGYLTRKDTEVKVARATRVKNKTPAELQITAEQILREARERQEAEIRPPKQ
KITDSAELADYRLRKRKEYEDLIRRVRWNKSVWVKYAKWEESQNDFKRARSVWERALDVD
YRDHTMWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI
FERWMGWEPDQQAWLSYIKFELRYNEIERARAIYERFVQCLPKVGAWIRFAKFEMKNGEI
ARARNCYERAVVKLADDEEAETLFVAFAEFEEKCKETERARCIYKFALDHIPKGRAEDLY
RKFVAFEKQYGDKEGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEESVGNKHRIRE
VYERAIANVPPAEEKRYWQRYIYLWINYALYEELEAQDFSRTRDVYSECLKLIPHNKFSF
AKIWLMAAQFEIRQLNLSGARGVLGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKY
LEWAPENCYAWSKYAELERSLSETERARAIFELAIAQPALDMPELLWKAYIDFEIAESEF
ERTRQLYERLLDRTKHLKVWISYAKFEASAMEETEQEDLAEDVLNEQRKLCIERARRVFE
NAINYYRTSAPELKEERAMLLEEWLNMESSFGDLGDIELVRVKLPKKLKKKRQLETDDGP
SGYEEYIDYLFPEETQASNLKILEQAYKWKQLKKQKVSSDDEDDD
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgtgaaggagaccctaatttagggtacttaaccagaaaagacaccgaggtc
aaagtcgcaagagcaaccagggttaaaaacaaaacccctgccgaactccaaataaccgcc
gaacagatcctccgagaagcacgggaacgtcaagaggccgaaatccgacctcctaaacag
aagattactgattcggctgaactcgcagactaccggttgcgtaaacggaaggaatacgag
gatttgattaggagagtgaggtggaacaagagtgtttgggttaaatatgccaaatgggaa
gaatctcagaacgattttaagcgtgctaggtcggtttgggaacgagcgttggacgttgat
tacagagatcatacgatgtggctcaagtatgccgaagtggagatgaagaataagtttatc
aatcatgcacggaatgtgtgggatcgggcggttactttgttgcccagagttgatcagttg
tggtacaagtacatacacatggaggaaatgctgggcaacgttgcaggtgcccggcaaata
tttgaaaggtggatgggttgggaacctgaccagcaagcgtggctctcttacatcaagttc
gagttacgatacaatgagattgagagggctcgggccatctatgaaagattcgtgcaatgc
ttgccgaaagttggtgcatggattcgctttgcgaagtttgaaatgaaaaacggtgagatt
gctagagcaaggaattgctacgaaagggcggttgttaagctagcagatgatgaagaggcc
gagactttatttgttgcatttgctgaatttgaagagaagtgcaaagaaactgagagagca
agatgtatctataaatttgctttagaccatatacctaaggggagggctgaggatctttat
agaaagtttgtggcttttgagaagcagtatggtgacaaagaaggcatcgaggatgccata
gttgggaaacgaaggtttcagtatgaggaggaagttagaaagaatcctctaaattatgac
tcgtggtttgactatattagactcgaggagagtgtggggaacaaacataggattcgtgag
gtttatgagagagcaattgctaatgttcctccagctgaagagaagaggtattggcaaaga
tacatatatttatggatcaattacgcgttgtatgaagagcttgaggcacaagacttttct
cgaaccagggatgtctatagcgagtgtttaaagctgatcccacacaacaaattctctttt
gctaaaatctggttgatggctgcccagtttgaaattaggcaattaaatctttcgggtgca
cgtggagttcttggaaatgcaattggaaaggctcctaaagataagatttttaagaagtac
attgagattgagttgcagctgggtaacatagatcggtgtcggaagctttatgaaaaatat
ctggaatgggctccagaaaattgctatgcttggagcaagtatgctgagttagagagatcc
ttgagcgagaccgagcgagccagagcgatttttgagcttgccattgcacagcctgcactt
gacatgccggagttattatggaaggcctacatagattttgagatagcagaatctgaattc
gaaagaaccaggcagttatatgagaggcttttggatcgaacaaaacatttgaaggtgtgg
atcagctatgcaaagtttgaagcatctgccatggaagagacagaacaggaagatctagct
gaagatgtcctcaatgagcagaggaaactttgcattgagcgtgccaggagagtatttgaa
aatgcaataaactattatagaacatctgctcccgagctgaaagaggaaagagccatgtta
cttgaggagtggctaaatatggaaagcagctttggtgatttgggtgacatagagctggtc
cgtgtcaaacttccgaagaaactaaaaaagaaaaggcaattagagacggatgatggtcct
tctgggtacgaggaatatatagattatctattccccgaagaaacacaagcgtcaaattta
aaaattttagagcaagcatacaaatggaagcaacttaagaagcaaaaagtttcttccgat
gatgaagatgatgattag
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